PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87867.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 84aa    MW: 9514.18 Da    PI: 11.1201
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.39.7e-291059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rie +  rqvtfskRrng+lKKA+ELSvLCd+eva++ifs+tg+lye++s
  RWR87867.1 10 RIEKTASRQVTFSKRRNGLLKKAFELSVLCDVEVALMIFSPTGRLYEFAS 59
                89**********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    
MVRGKTQMRR IEKTASRQVT FSKRRNGLLK KAFELSVLCD VEVALMIFSP TGRLYEFASA  60
GLVNEESTCW LARPRFVKVK SSAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-33MIKC_MADS family protein