PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87660.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 199aa MW: 23415.3 Da PI: 5.1218

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.4	1.6e-20	19	73	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +f+++q++ Le+ F+++ ++ e++ eLAk+lgL+ rqV +WFqNrRa++k RWR87660.1 19 DKKKRFSDKQIRYLESTFQEETKLEPERKLELAKELGLEPRQVAIWFQNRRARWK 73 57788*************************************************9 PP
2	HD-ZIP_I/II	124.7	4.2e-40	20	111	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+r+s++q++ LE++F+ee+kLeperK ela+eLgl+prqva+WFqnrRAR+k+kqlE+dy++L+++yd+l+++ ++++ke++ L ++l++ RWR87660.1 20 KKKRFSDKQIRYLESTFQEETKLEPERKLELAKELGLEPRQVAIWFQNRRARWKSKQLEQDYAVLRASYDELASRIDSIQKEKQCLLKQLQT 111 9**************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MERKERSPEA VGKKKKKRDK KKRFSDKQIR YLESTFQEET KLEPERKLEL AKELGLEPRQ 60 VAIWFQNRRA RWKSKQLEQD YAVLRASYDE LASRIDSIQK EKQCLLKQLQ TLRNLVENGS 120 INGDSHHRET KCCESEEKPT LLLEEVADME EFGVEEQGLV NNSETANGFL TLTDDWCEFD 180 SSCFYDQSSS SLSLWELWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	21	KKKKKRDKK
2	13	22	KKKKKRDKKK
3	14	21	KKKKRDKK
4	68	76	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-29	HD-ZIP family protein