PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87315.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HSF

Protein Properties

Length: 511aa MW: 56661.2 Da PI: 4.5789

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.5	1.6e-36	26	118	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sws ++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i+ RWR87315.1 26 FLSKTYDMVDDPSTDAIVSWSPSNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSIN 113 9******************999*************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + RWR87315.1 114 RRKPS 118 975 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MDKSQGNPIP NPNPNANAMA NAPPPFLSKT YDMVDDPSTD AIVSWSPSNN SFVVWDPPEF 60 ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK SINRRKPSHV 120 HNQTQPPQGQ HASTGACVEV GKFGLEEEIE RLKRDKNVLM QELVRLRQQQ QSTDHQLQTM 180 GQRLQGMEQR QQQMMSFLAK AMQSPGFLAQ LVQQQNDSNR RIDGVNKKRR LPKQEDGSEG 240 ECASPDGQIV KYQPLMNEAA KAMFMQILKK IESPPRLEPT NNVDSFLIDN APSPAGALDS 300 GDSSSRSSGV TLAEVPHSSG FSYMSTASEF PAIHTSAAIS EIQSSAAVTD VAGTARLPDG 360 SVLSGVQEAV MPPQIEVVIP EFPPMQIMQE SNVVNLPNEN FAVPEDGSVF LDPLPIEVDG 420 AMAIEADKFS ADTDMDVLFD PRLPSINDSY WEQFLAENLL SGETEEVELG TQESNAKDTE 480 GNPSKENGWS KAQRMDHLTE QMGLLTSESQ R

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MDKSQGNPIP NPNPNANAMA NAPPPFLSKT YDMVDDPSTD AIVSWSPSNN SFVVWDPPEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK SINRRKPSHV  120
HNQTQPPQGQ HASTGACVEV GKFGLEEEIE RLKRDKNVLM QELVRLRQQQ QSTDHQLQTM  180
GQRLQGMEQR QQQMMSFLAK AMQSPGFLAQ LVQQQNDSNR RIDGVNKKRR LPKQEDGSEG  240
ECASPDGQIV KYQPLMNEAA KAMFMQILKK IESPPRLEPT NNVDSFLIDN APSPAGALDS  300
GDSSSRSSGV TLAEVPHSSG FSYMSTASEF PAIHTSAAIS EIQSSAAVTD VAGTARLPDG  360
SVLSGVQEAV MPPQIEVVIP EFPPMQIMQE SNVVNLPNEN FAVPEDGSVF LDPLPIEVDG  420
AMAIEADKFS ADTDMDVLFD PRLPSINDSY WEQFLAENLL SGETEEVELG TQESNAKDTE  480
GNPSKENGWS KAQRMDHLTE QMGLLTSESQ R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02990.1	1e-118	HSF family protein