PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87308.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 789aa    MW: 87265.9 Da    PI: 6.0306
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-2085140156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++e+e+lF+++++p++++r +L++ lgL+ rqVk+WFqNrR+++k
  RWR87308.1  85 KKRYHRHTSRQIQEMEALFKECPHPDEKQRMKLSQDLGLKPRQVKFWFQNRRTQMK 140
                 688999***********************************************998 PP
2START156.32.4e-492825072206
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                 la +a++elv++   +ep+W +ss  +  +evl   e ++              +++ea r sgvv+m++ +lv  +ld + +W e ++    +a+t++
  RWR87308.1 282 LAMSAMDELVRMSRTNEPLWIRSS--NSAKEVLDFGEHARMfpwpmslkqnhneFRTEATRGSGVVIMNSITLVDAFLDAN-KWMELFPaivsRAKTIQ 377
                 67899*******************..56666665555555567777788888889**************************.***************** PP

                 EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
       START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                  i++g      g lqlm+aelq+lsplvp R+  f Ry++q  ++g+wvivd   ds  +  e + s+ R  ++pSg++i++++ng+skvtwveh++++
  RWR87308.1 378 IITPGvsghgnGSLQLMYAELQVLSPLVPtREAHFFRYCQQnAEEGTWVIVDFPADSFHDSIEpTLSSYR--RRPSGCVIQDMPNGYSKVTWVEHAEVE 474
                 ****************************************************877766665544555555..6************************** PP

                 SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                 ++ +h++++ +v+s++a+ga++w+a lqrqce+
  RWR87308.1 475 DNAVHQIFNDFVNSRMAFGAQRWLAILQRQCER 507
                 *******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    
MYGDCQVMSS MGGNMVSDSI FSSPIQSPNL NFMSNMPFHP FSNIIPKEEV GMMRGKEEEM  60
ESGSGSGPIE GGSGDEQENE QKPKKKRYHR HTSRQIQEME ALFKECPHPD EKQRMKLSQD  120
LGLKPRQVKF WFQNRRTQMK AQQDRSDNVI LRAENENLKN ENYRLQAAIR NVICPSCGGP  180
AMLAEVSLDE QHLRLENARL KEELDRLSCI TSRYSSRSLH GLGPAPPLLL PSLDLDMGVY  240
SRHFNEPLRS CPELIQAPPP MSENTPFSSG LMEHEKPIAL ELAMSAMDEL VRMSRTNEPL  300
WIRSSNSAKE VLDFGEHARM FPWPMSLKQN HNEFRTEATR GSGVVIMNSI TLVDAFLDAN  360
KWMELFPAIV SRAKTIQIIT PGVSGHGNGS LQLMYAELQV LSPLVPTREA HFFRYCQQNA  420
EEGTWVIVDF PADSFHDSIE PTLSSYRRRP SGCVIQDMPN GYSKVTWVEH AEVEDNAVHQ  480
IFNDFVNSRM AFGAQRWLAI LQRQCERLAS LMARSIPDLG VIPTPEARKN MMKLAQRMIR  540
TFCVNISSSG GQLWTALSDS PDDTIRITTR KNMEPGQPNG IILTAVSTTW LPFSHHQVFD  600
LLRDEQKRSQ LDVLSNGNSL HEVAHIANGS DPGNSISLLR INAASNSAQH VELMLQESCT  660
DPSGSLVVYT TVDVNAIQVA MSGEDPSYIP LLPIGFILLP TGPTSDNSTS NHLDSLSPSN  720
DGNGPTSGCL LTVGLQVLAS SIPTAKLNLS SVSAINNHIC NVVHQITAAL GGAGGGVRTE  780
PQAAAVSEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein