PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87279.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 304aa MW: 33322.1 Da PI: 8.4833

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.3e-18	151	205	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k RWR87279.1 151 RKKLRLSKEQSCYLEESFKEHPTLNPKQKLALAKQLNLRSRQVEVWFQNRRARTK 205 778899***********************************************98 PP
2	HD-ZIP_I/II	120.7	7.7e-39	151	240	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ LEesF+e+ +L+p++K +la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL++e ++L+++ RWR87279.1 151 RKKLRLSKEQSCYLEESFKEHPTLNPKQKLALAKQLNLRSRQVEVWFQNRRARTKLKQTEVDCEYLKKCCESLTEENRRLHRELQDLKAQ 240 69*************************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MELALSIGGR RICGGSDHRF RARQGYGGGD EEMNSGSSSK NGASVQLDLK LSWSTDTGDV 60 IAHGGGGSGT SSSDKSSRGG GGGGLELDVN EIPLPLTSIN QKEMVGPSSS DTRPTQVGKR 120 GDWETDGERG CSRCSDEEEE EGGGSTTSYT RKKLRLSKEQ SCYLEESFKE HPTLNPKQKL 180 ALAKQLNLRS RQVEVWFQNR RARTKLKQTE VDCEYLKKCC ESLTEENRRL HRELQDLKAQ 240 KFPRNPFHLH GPATMITMCP SCEQLTTTMP TTTGNNISSK TVTFGVSVPK SRFYPFAQRT 300 SAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	156	TRKKLRL
2	200	208	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-48	HD-ZIP family protein