PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR87037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23675.3 Da PI: 10.6619 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.7 | 1.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRrng+lKKA+ELSvLCdaev++i fs tgk y yss RWR87037.1 9 KRIENTTSRQVTFSKRRNGLLKKAFELSVLCDAEVCLIAFSATGKAYQYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 72.7 | 1.1e-24 | 84 | 171 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e ++ el++L++ ++L+ ++hl GedL sL++keL+qLe+q++ ++++iR++K ++ e+i+ l+ k+++lq+en +L++k++ RWR87037.1 84 RTIEFWRAELDNLRRSKDSLEARLKHLAGEDLMSLNMKELKQLERQVKVGVERIRTRKRCIISEHISLLKGKQRALQDENACLQRKVK 171 56799********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MGRGKVELKR IENTTSRQVT FSKRRNGLLK KAFELSVLCD AEVCLIAFSA TGKAYQYSSH 60 EMERTISKYR SMAGVPELNV RHPRTIEFWR AELDNLRRSK DSLEARLKHL AGEDLMSLNM 120 KELKQLERQV KVGVERIRTR KRCIISEHIS LLKGKQRALQ DENACLQRKV KLHETNTSSR 180 SLANNQLAID FQGIGKSRMD GVPNYT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 4e-46 | MIKC_MADS family protein |