PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85929.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 1056aa MW: 117445 Da PI: 6.2329

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77	2e-24	132	233	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ +sW++++iyr++++r++lt+GW+ Fv a++L++gD+v+F ++++ +l+ RWR85929.1 132 FCKTLTASDTSTHGGFSVPRRAAEKLfpsldySMQPPT-QELVVRDLHDNSWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDEKSQLL 227 99*******************999*9555554.49**********************************************..45677789 PP EEEE-S CS B3 94 vkvfrk 99 ++v+r+ RWR85929.1 228 LGVRRA 233 999997 PP
2	Auxin_resp	95	1.2e-31	258	351	1	83
Auxin_resp 1 aahaastksvFevvYnPr..........astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+haa+++s+F+v+YnPr a++seFv+++ k++ka++ ++vs+GmRf m+fete+s +rr++Gtvvg+sdldp++Wp S+Wr+++ RWR85929.1 258 ASHAAANRSPFTVFYNPRtyitrlhlhrACPSEFVIPLGKYQKAVYgTQVSIGMRFGMMFETEESGKRRYMGTVVGISDLDPLKWPSSRWRNIQ 351 789************73333333333579***********9******************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence
MKGATLLEEM KLLGELQGQS GVRKSLNSEL WNACAGPLVS LPQVGGLVYY FPQGHSEQVA 60 VSTKKAANSH IPNYPNLPSQ LMCQVHNVTL HADRDTDEIY AQMTLQPVNS EKDILSIPGF 120 EFRQSKQPSD FFCKTLTASD TSTHGGFSVP RRAAEKLFPS LDYSMQPPTQ ELVVRDLHDN 180 SWTFRHIYRG QPKRHLLTTG WSLFVGAKRL RAGDSVLFIR DEKSQLLLGV RRANRQLTAL 240 PSSVLSADSM HIGVLAAASH AAANRSPFTV FYNPRTYITR LHLHRACPSE FVIPLGKYQK 300 AVYGTQVSIG MRFGMMFETE ESGKRRYMGT VVGISDLDPL KWPSSRWRNI QVEWDEPGFG 360 ERQNRVNVWE IETPENPFIC PSPISSLKRP FHPGFLGMGV ETGWENMLRR TLSQVSENGN 420 GDLQYSPIPN LGSELMKSML KPQLSSANVF GRLQQNDAAI IQNLSSNKLS RFPSSIPSCF 480 MNGTLKQHED TTFQTSVQRN IQLLHAQQQL PPLQNVLIQN LNVQNCLEQT QIVGSNLASH 540 NHKRPHEQIT EEPMIEQISR GLQDKFNEHK MDPVVNRNEK SFQQKVRVDK PEMAHEPETD 600 QLLEHSIHIL SPPLPQLQTE VIGSPLNPQN LPNHLFLNQS SPLESLMGSQ LVQQQLETNT 660 AQLQRTDTSL LDANNLNSFL MFSGHISAQH LETGDWMFHP SSYQSPTSIL KSPRPRSGSG 720 KLDTPHALAP VNSDDAENVS SVVNVEAYSP SKNAQFPCIS NAHVSQCLPT LYQELSGPQQ 780 VTYLKTLSME HNPGIQPSRF HAISGEQDTA LLRSISNPCG LRDFSEESNS QSEAYSSFHL 840 EASNASTMVD PSVSSTCLEG FGILKDGGFH NPPEGLVGNF CSSQDVQSQV TSASLANSQS 900 FPFQEFPDNS GGTSSSDLDV DENSFFHNGS WQQVSPPLRT YTKVQKLGSV GRSIDVTRFK 960 GYNELKSAIA CMFGLEGQLD DPRGSGWKLV YVDYENDVLL VGDDPWEEFV SCVRCIRILS 1020 PSEVQQMSQD GTQINKIMIQ GSKSSIPEDA NDWDGP

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence

MKGATLLEEM KLLGELQGQS GVRKSLNSEL WNACAGPLVS LPQVGGLVYY FPQGHSEQVA  60
VSTKKAANSH IPNYPNLPSQ LMCQVHNVTL HADRDTDEIY AQMTLQPVNS EKDILSIPGF  120
EFRQSKQPSD FFCKTLTASD TSTHGGFSVP RRAAEKLFPS LDYSMQPPTQ ELVVRDLHDN  180
SWTFRHIYRG QPKRHLLTTG WSLFVGAKRL RAGDSVLFIR DEKSQLLLGV RRANRQLTAL  240
PSSVLSADSM HIGVLAAASH AAANRSPFTV FYNPRTYITR LHLHRACPSE FVIPLGKYQK  300
AVYGTQVSIG MRFGMMFETE ESGKRRYMGT VVGISDLDPL KWPSSRWRNI QVEWDEPGFG  360
ERQNRVNVWE IETPENPFIC PSPISSLKRP FHPGFLGMGV ETGWENMLRR TLSQVSENGN  420
GDLQYSPIPN LGSELMKSML KPQLSSANVF GRLQQNDAAI IQNLSSNKLS RFPSSIPSCF  480
MNGTLKQHED TTFQTSVQRN IQLLHAQQQL PPLQNVLIQN LNVQNCLEQT QIVGSNLASH  540
NHKRPHEQIT EEPMIEQISR GLQDKFNEHK MDPVVNRNEK SFQQKVRVDK PEMAHEPETD  600
QLLEHSIHIL SPPLPQLQTE VIGSPLNPQN LPNHLFLNQS SPLESLMGSQ LVQQQLETNT  660
AQLQRTDTSL LDANNLNSFL MFSGHISAQH LETGDWMFHP SSYQSPTSIL KSPRPRSGSG  720
KLDTPHALAP VNSDDAENVS SVVNVEAYSP SKNAQFPCIS NAHVSQCLPT LYQELSGPQQ  780
VTYLKTLSME HNPGIQPSRF HAISGEQDTA LLRSISNPCG LRDFSEESNS QSEAYSSFHL  840
EASNASTMVD PSVSSTCLEG FGILKDGGFH NPPEGLVGNF CSSQDVQSQV TSASLANSQS  900
FPFQEFPDNS GGTSSSDLDV DENSFFHNGS WQQVSPPLRT YTKVQKLGSV GRSIDVTRFK  960
GYNELKSAIA CMFGLEGQLD DPRGSGWKLV YVDYENDVLL VGDDPWEEFV SCVRCIRILS  1020
PSEVQQMSQD GTQINKIMIQ GSKSSIPEDA NDWDGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19850.1	0.0	ARF family protein