PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84336.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 379aa MW: 42606.5 Da PI: 9.2428

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.9	1.9e-40	149	226	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++dl++ak+yh+rh+vCe+hska++v+ + gleqrfCqqCsrfh+l efDe+krsCr+rLa+hn+rrrk++ RWR84336.1 149 RCQVEGCNVDLTNAKHYHKRHRVCEFHSKATKVVlAGGLEQRFCQQCSRFHALCEFDEAKRSCRKRLADHNRRRRKPH 226 6**************************9988725689***********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MNSSTTSEAS VWGNWNSSTP PIMSFVGLES NTQKQFWEWG TSTNASSTHN NVNHPFIIPT 60 TSFTDFSSTS APTNFPLPYP QINHCSSSMA NLFLKREDGC SGIDGGSCGN ARIGLNLGHR 120 TYFSSRETAV IDRLFKRSRG FYQANQIPRC QVEGCNVDLT NAKHYHKRHR VCEFHSKATK 180 VVLAGGLEQR FCQQCSRFHA LCEFDEAKRS CRKRLADHNR RRRKPHPGIT SDSGARKITP 240 NSIEKTQAAE TRTRVSPFPL LMTKDNKFSK QEELNHFQQK LATPQLQKGP ALSLSGAGAV 300 QRSCESQFTY THQPFFSTSA FFDREPVSSS SYLMLNRNCY SNNLLNEASE STGARSNQTH 360 QQQPEEVQSF CSWVMPCSK

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MNSSTTSEAS VWGNWNSSTP PIMSFVGLES NTQKQFWEWG TSTNASSTHN NVNHPFIIPT  60
TSFTDFSSTS APTNFPLPYP QINHCSSSMA NLFLKREDGC SGIDGGSCGN ARIGLNLGHR  120
TYFSSRETAV IDRLFKRSRG FYQANQIPRC QVEGCNVDLT NAKHYHKRHR VCEFHSKATK  180
VVLAGGLEQR FCQQCSRFHA LCEFDEAKRS CRKRLADHNR RRRKPHPGIT SDSGARKITP  240
NSIEKTQAAE TRTRVSPFPL LMTKDNKFSK QEELNHFQQK LATPQLQKGP ALSLSGAGAV  300
QRSCESQFTY THQPFFSTSA FFDREPVSSS SYLMLNRNCY SNNLLNEASE STGARSNQTH  360
QQQPEEVQSF CSWVMPCSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	225	KRSCRKRLADHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-54	SBP family protein