PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84232.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 1077aa MW: 120143 Da PI: 6.866

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.2	2.8e-22	156	257	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+ltpsd++++g +++p++ ae++ ++++++ ++l+ +d++ +sW++++i+r++++r++lt+GW+ Fv+ ++L + D+v+F ++++ +l+ RWR84232.1 156 FCKTLTPSDTSTHGGFSVPRRAAEKIfppldfSMQPPS-QELVAKDLHDNSWTFRHIFRGQPKRHLLTTGWSLFVSGKRLFASDSVLFI--RDEKSQLL 251 99***************************9656554.59**********************************************..45677789 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ RWR84232.1 252 LGIRRA 257 999986 PP
2	Auxin_resp	116.6	2.1e-38	282	365	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+f+te+ +rr++Gt++g+sdld+vrW+nS+Wr+L+ RWR84232.1 282 AAHAATNHSPFTVFYNPRASPSEFVIPLAKYNKAIYsNQISLGMRFRMMFDTEELGTRRYMGTITGISDLDSVRWKNSQWRNLQ 365 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1077 aa Download sequence
MKVPMYAPAA DPSGGKEETL LFYLSVFTRV KGFLPMRCCH VSICREDEEH KPGAVARVRG 60 SARFVACGRY LRRLLPTRPL RAGCSFYAEG CQHSHSKLPE SSLEDDLPPS QYQIAYAETD 120 EVYAQMTLQP VNTFDKEILL ASELALKSIK PQMEFFCKTL TPSDTSTHGG FSVPRRAAEK 180 IFPPLDFSMQ PPSQELVAKD LHDNSWTFRH IFRGQPKRHL LTTGWSLFVS GKRLFASDSV 240 LFIRDEKSQL LLGIRRAKKQ SMNISSSVLS SDSMLIGILA AAAHAATNHS PFTVFYNPRA 300 SPSEFVIPLA KYNKAIYSNQ ISLGMRFRMM FDTEELGTRR YMGTITGISD LDSVRWKNSQ 360 WRNLQVGWDE ASAGERLNRV SIWEIEPVAA PFFICPPPFF RSRFPRQPGL SDEESSDMEN 420 LFRRTVPWFA EEIGTNSQNA VFPGLSLVEW MNMQQNPPIT NSTMQSDYLC SLPGSVLQNL 480 AAADMTRQLG LQAQNIQQNN PQFNAPRPPQ QVQQLNIPKL SVVVDHLGSV DRLQQQELDG 540 INQHLPRIRI RIISNLLQPP ILVQTQVQQQ QLIQNDQPQV KLSQNQQHQQ PEQLHIGRTQ 600 PSNQMPDQLS HPGNQQVQLS EHQIKLQLLQ KLQQEQQPFL SQPTLQQPQL THLQKQQRQP 660 LEIPHLPQNP SLPSQQQAIQ QHSVKKSEVN VSYSQSMQHQ QALLPEFPML PPPPSASLLS 720 PPAGFLLAAG GSHSRITNDA PSCSTSPSTN NCSIHPQSIL NRTAHGTVTT DGMAQSTEPI 780 VSPGALEVMT TSLNLAKAVQ KTDMHMKPSI PVSTSHVQGT HQACSSALQM YLDTPSSGTS 840 ACFSHTDTQL QHSPPSASLN PSAMLLRDAV HSDDVHANPR NNGLFGTPST PDYLLARNIG 900 SEKDLQSESM LTNFGNSKEV PHEPSSTVSQ SFGVLDMEFN NEVSVDPEIN YSGFMKGGSW 960 APPPQLQPMR TFTKVHKRGA VGRSVDIARY SGYDELKQDL AHMFGIEGQL EDGQKIGWKL 1020 VYVDHENDVL LLGDDPWEEF VNCVRCIKIL SPQEVQQMSL DGDFENALLQ NQGSSRL

Sequence ? help Back to Top

Protein Sequence Length: 1077 aa Download sequence

MKVPMYAPAA DPSGGKEETL LFYLSVFTRV KGFLPMRCCH VSICREDEEH KPGAVARVRG  60
SARFVACGRY LRRLLPTRPL RAGCSFYAEG CQHSHSKLPE SSLEDDLPPS QYQIAYAETD  120
EVYAQMTLQP VNTFDKEILL ASELALKSIK PQMEFFCKTL TPSDTSTHGG FSVPRRAAEK  180
IFPPLDFSMQ PPSQELVAKD LHDNSWTFRH IFRGQPKRHL LTTGWSLFVS GKRLFASDSV  240
LFIRDEKSQL LLGIRRAKKQ SMNISSSVLS SDSMLIGILA AAAHAATNHS PFTVFYNPRA  300
SPSEFVIPLA KYNKAIYSNQ ISLGMRFRMM FDTEELGTRR YMGTITGISD LDSVRWKNSQ  360
WRNLQVGWDE ASAGERLNRV SIWEIEPVAA PFFICPPPFF RSRFPRQPGL SDEESSDMEN  420
LFRRTVPWFA EEIGTNSQNA VFPGLSLVEW MNMQQNPPIT NSTMQSDYLC SLPGSVLQNL  480
AAADMTRQLG LQAQNIQQNN PQFNAPRPPQ QVQQLNIPKL SVVVDHLGSV DRLQQQELDG  540
INQHLPRIRI RIISNLLQPP ILVQTQVQQQ QLIQNDQPQV KLSQNQQHQQ PEQLHIGRTQ  600
PSNQMPDQLS HPGNQQVQLS EHQIKLQLLQ KLQQEQQPFL SQPTLQQPQL THLQKQQRQP  660
LEIPHLPQNP SLPSQQQAIQ QHSVKKSEVN VSYSQSMQHQ QALLPEFPML PPPPSASLLS  720
PPAGFLLAAG GSHSRITNDA PSCSTSPSTN NCSIHPQSIL NRTAHGTVTT DGMAQSTEPI  780
VSPGALEVMT TSLNLAKAVQ KTDMHMKPSI PVSTSHVQGT HQACSSALQM YLDTPSSGTS  840
ACFSHTDTQL QHSPPSASLN PSAMLLRDAV HSDDVHANPR NNGLFGTPST PDYLLARNIG  900
SEKDLQSESM LTNFGNSKEV PHEPSSTVSQ SFGVLDMEFN NEVSVDPEIN YSGFMKGGSW  960
APPPQLQPMR TFTKVHKRGA VGRSVDIARY SGYDELKQDL AHMFGIEGQL EDGQKIGWKL  1020
VYVDHENDVL LLGDDPWEEF VNCVRCIKIL SPQEVQQMSL DGDFENALLQ NQGSSRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	1e-159	ARF family protein