PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84217.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 405aa MW: 45145.6 Da PI: 7.1247

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84217.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.7	6e-42	116	192	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++dl+ ak+yhr+hkvCe hsk+p+v+vsgle+rfCqqCsrfhelsefDe+krsCrrrL++hn+rrrk+q RWR84217.1 116 ICQVEGCNVDLTGAKDYHRKHKVCESHSKCPKVIVSGLERRFCQQCSRFHELSEFDEKKRSCRRRLSDHNARRRKPQ 192 5**************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MDCNPKTPSL WDLENLVLFN GKVCDTPNQL HPIEELGMDS GSSSKSSISV HETQRQVPQF 60 SFQTIEGYPK DSHKNNELKG SGEPLIGLKL GRRTYLEDFS SSLPRNSVKK SRVSCICQVE 120 GCNVDLTGAK DYHRKHKVCE SHSKCPKVIV SGLERRFCQQ CSRFHELSEF DEKKRSCRRR 180 LSDHNARRRK PQLNTISFGS ARLASSFYDG RQQMNLAFNR VPLVHTTQAN VTWEDSCEFK 240 PTLAKSSWLR TPKEGIDGYL YFPGIELPNA ISTTHHHDSD RLLSFKGAAV EVPGQGLEAS 300 MVSSNQDATP DIQRALSLLS ASAWGSSDSL DQIMLGNHAS VAQPTMHTGF QGLQLSSSEF 360 LPDDHPSAEP LVASLALHNS GSQLHEFQLF QTPFESAFLD NNLMH

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MDCNPKTPSL WDLENLVLFN GKVCDTPNQL HPIEELGMDS GSSSKSSISV HETQRQVPQF  60
SFQTIEGYPK DSHKNNELKG SGEPLIGLKL GRRTYLEDFS SSLPRNSVKK SRVSCICQVE  120
GCNVDLTGAK DYHRKHKVCE SHSKCPKVIV SGLERRFCQQ CSRFHELSEF DEKKRSCRRR  180
LSDHNARRRK PQLNTISFGS ARLASSFYDG RQQMNLAFNR VPLVHTTQAN VTWEDSCEFK  240
PTLAKSSWLR TPKEGIDGYL YFPGIELPNA ISTTHHHDSD RLLSFKGAAV EVPGQGLEAS  300
MVSSNQDATP DIQRALSLLS ASAWGSSDSL DQIMLGNHAS VAQPTMHTGF QGLQLSSSEF  360
LPDDHPSAEP LVASLALHNS GSQLHEFQLF QTPFESAFLD NNLMH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	190	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-58	SBP family protein