PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83892.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Nin-like

Protein Properties

Length: 964aa MW: 105942 Da PI: 5.9243

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.3e-29	580	630	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl+dl+k+Fs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ RWR83892.1 580 EKNISLSDLQKHFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 630 79***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence
MEGFMSSDVE GNLVSGDLYS FSELLDFEDY HELCYPLTTE EVITSVGLSA VQSTLPGSFD 60 SSFPQSNLTV QSPDIFCLNN SGSSFNTVGV SSSNCGDRPI LQQRINNQFG IPVNSSNVGD 120 SVINGIGNSI SLLNALDKEK NFVPRSLGWT LPEKLLKALS LFKESAGGGI LAQVWVPVEH 180 GDVPFLSTCE QPYLLDQMLA GYREVSRTFT FAARETPGSF PGLPGRVFIS KMPEWTSNVV 240 YYRKPEYLRV DHALDHKVCG SLAMPVFERC EQSCCAVFEL VTAKEKPNFN AEMENVRQAI 300 QAVDLRTSET RARAQSFSKD QRAAFAEIVD VLRAVCHAHR LPLALTWIPC YPDELSDEST 360 ITSAGEVDTS PGQKTILCVE ESACYVNDEK MHGFMHACQE HHLEKGQGVA GKALLSNHPF 420 FSCDVKVYGI QEYPHVHHAR KFGLNAAVAI RLRSTYTGSD DYILEFFLPV SCQGRSEQQL 480 LLNNLSTTMQ RICRSLRTVS DAELVGGEDR NVGIQNEAQS NLPTDMSGKS FQPTLSKLES 540 SEKVAVKIQN PGIGGSKADS FQEKTSTNSR QTEKKRITME KNISLSDLQK HFSGSLKDAA 600 KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQIV MESVQGVDGM LKYDPVSGSL 660 VAAASVAPDL EDRSGVFSSK KNIAVKSPEA EARDLMGTSS IAATKSEQFS VKLEGDDTHV 720 SVSQMESLSN NVFSNKKYER EKDRILPNSG MSQQVSFESM QGGYSKDILH GSFVAKEGCK 780 TLNSRRGLSL ENSDRHVTSR SLNPADEIDT SIDIDDSILD HNQRSSSGTT GSSNGSGSMI 840 NCSASSSPTF RRWNGKMYLE DGSSVVTVKA TYKEDTVRFK FMPSMGCFHL FEEIGKRFKL 900 PTGAFQLKYL DDEEEWVMLV SDSDLLECID ILETSGSRSV KLLVRDLACA EVSSAGSNCL 960 LTGS

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence

MEGFMSSDVE GNLVSGDLYS FSELLDFEDY HELCYPLTTE EVITSVGLSA VQSTLPGSFD  60
SSFPQSNLTV QSPDIFCLNN SGSSFNTVGV SSSNCGDRPI LQQRINNQFG IPVNSSNVGD  120
SVINGIGNSI SLLNALDKEK NFVPRSLGWT LPEKLLKALS LFKESAGGGI LAQVWVPVEH  180
GDVPFLSTCE QPYLLDQMLA GYREVSRTFT FAARETPGSF PGLPGRVFIS KMPEWTSNVV  240
YYRKPEYLRV DHALDHKVCG SLAMPVFERC EQSCCAVFEL VTAKEKPNFN AEMENVRQAI  300
QAVDLRTSET RARAQSFSKD QRAAFAEIVD VLRAVCHAHR LPLALTWIPC YPDELSDEST  360
ITSAGEVDTS PGQKTILCVE ESACYVNDEK MHGFMHACQE HHLEKGQGVA GKALLSNHPF  420
FSCDVKVYGI QEYPHVHHAR KFGLNAAVAI RLRSTYTGSD DYILEFFLPV SCQGRSEQQL  480
LLNNLSTTMQ RICRSLRTVS DAELVGGEDR NVGIQNEAQS NLPTDMSGKS FQPTLSKLES  540
SEKVAVKIQN PGIGGSKADS FQEKTSTNSR QTEKKRITME KNISLSDLQK HFSGSLKDAA  600
KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQIV MESVQGVDGM LKYDPVSGSL  660
VAAASVAPDL EDRSGVFSSK KNIAVKSPEA EARDLMGTSS IAATKSEQFS VKLEGDDTHV  720
SVSQMESLSN NVFSNKKYER EKDRILPNSG MSQQVSFESM QGGYSKDILH GSFVAKEGCK  780
TLNSRRGLSL ENSDRHVTSR SLNPADEIDT SIDIDDSILD HNQRSSSGTT GSSNGSGSMI  840
NCSASSSPTF RRWNGKMYLE DGSSVVTVKA TYKEDTVRFK FMPSMGCFHL FEEIGKRFKL  900
PTGAFQLKYL DDEEEWVMLV SDSDLLECID ILETSGSRSV KLLVRDLACA EVSSAGSNCL  960
LTGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein