PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83408.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

NF-YC

Protein Properties

Length: 285aa MW: 31996.8 Da PI: 4.7865

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83408.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.6	2.8e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +t+ ++++v + ++fdfl +iv + RWR83408.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKQCVRSFNVFDFLREIVSK 86 5789*************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YDITLQRGAK 60 TMSSLHLKQC VRSFNVFDFL REIVSKVPDM GGSDAAGEDR SITRRRKAVD DEDIDTDEES 120 KRPRIVRSLD TIMLNHEAGH AGSGRGRGRV RGRGRGRPRR AVERESTFIE KCEDDPDISP 180 ERNGKQSKQN AEVERLDNSI EAKELKENIV SSSANAIIQK IDLNVVLDEN GDTSAAVTSI 240 PQPESKYEEY PGWSLSDTVK MAIDPIQLAQ FNGEIDEEED YDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	155	RGRGRVRGRGR
2	147	157	RGRGRVRGRGR
3	149	159	RGRGRVRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-63	NF-YC family protein