PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR83346.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 331aa    MW: 37759.2 Da    PI: 8.6232
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR83346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74e-151153345
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                ie +  r+ tf+kR +g+ KKA+E  +LCd++v++i ++++g 
  RWR83346.1 11 IECQKSRNATFIKRIKGLKKKAFEFATLCDVDVCLICLGPQGD 53
                788899**********************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MGRAKIPINL IECQKSRNAT FIKRIKGLKK KAFEFATLCD VDVCLICLGP QGDRHYKPEI  60
WPNEQSEVRR IIKRYKSLSK DEQVKQKLNL SGFLEQRTKK LEDALKHRSR EKENAKYTSL  120
DDRLNEFSPE MLQDLLATLD SKIEAANRKV ELMKYKHSFQ GNELSVVVPP QTDPNQGLLD  180
MYRMLDGDDS IVPISYLKPL DQGHMPLELP YIPDNPNYSS SRNFNASNDN MLSPPSMGYY  240
VNPGMRTLDF NTSKNNMLSP PTVGYYVNQG MRTLDTNMFQ SQNELCGAEC LKCLMQTQSS  300
LMGFSPSSPN SNSGSVHKLL VHQMHHMNHG F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.15e-20M-type_MADS family protein