PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83280.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 443aa MW: 49675.4 Da PI: 7.152

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.8	3.2e-41	120	269	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssg... 88 kkdrhski T +g+RdRR+Rls+e+a++fFdLqd+LGfdk+skt++WL++++ +aik+lt+ + a+s +ssas+ g RWR83280.1 120 SKKDRHSKIFTRQGPRDRRMRLSLEIAREFFDLQDMLGFDKASKTVDWLMTNSREAIKKLTRGlsrangggsgT--------AKSTVSSASE---Gevv 207 69**********************************************************976666664321........2222222221...1112 PP TCP 89 .................kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 k+a+++aks++++++a +++ ++ke ra arararert+ k++++ RWR83280.1 208 sgfvespgnpncrkekaKEATQKAKSSRPSRKA-AFNPPSKEWRAIARARARERTKTKKMMNL 269 333334455677776534444444444444444.4778888*************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MFPSAPVNGV LHADAVQYPF DHGSPCYRND FSSSFFQYFS SPIDEGDGEP LLHHQQDFLE 60 DHFPQHQLLM TNATNPPTAE AISNTTPEPK LLPGDICFMG PPQNFFPRKK ISSLGRKKGS 120 KKDRHSKIFT RQGPRDRRMR LSLEIAREFF DLQDMLGFDK ASKTVDWLMT NSREAIKKLT 180 RGLSRANGGG SGTAKSTVSS ASEGEVVSGF VESPGNPNCR KEKAKEATQK AKSSRPSRKA 240 AFNPPSKEWR AIARARARER TKTKKMMNLK VDESDQMPNP INSYEYEPNQ LATYSSPQET 300 GDQEPGSQTG DKKYPSELLA EVEQLPSLSL DHQSSLHEAA TAADDSLSIL QYHPPLSISI 360 GLTSDDLISL QSNEFNNFLQ QNWELDSMRP NSGYVIPNAH LSADNLQDRV SSPLFKMPTG 420 NRFHPQFSDA QYFYTKPWEN YNC

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MFPSAPVNGV LHADAVQYPF DHGSPCYRND FSSSFFQYFS SPIDEGDGEP LLHHQQDFLE  60
DHFPQHQLLM TNATNPPTAE AISNTTPEPK LLPGDICFMG PPQNFFPRKK ISSLGRKKGS  120
KKDRHSKIFT RQGPRDRRMR LSLEIAREFF DLQDMLGFDK ASKTVDWLMT NSREAIKKLT  180
RGLSRANGGG SGTAKSTVSS ASEGEVVSGF VESPGNPNCR KEKAKEATQK AKSSRPSRKA  240
AFNPPSKEWR AIARARARER TKTKKMMNLK VDESDQMPNP INSYEYEPNQ LATYSSPQET  300
GDQEPGSQTG DKKYPSELLA EVEQLPSLSL DHQSSLHEAA TAADDSLSIL QYHPPLSISI  360
GLTSDDLISL QSNEFNNFLQ QNWELDSMRP NSGYVIPNAH LSADNLQDRV SSPLFKMPTG  420
NRFHPQFSDA QYFYTKPWEN YNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	4e-28	TCP family protein