PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83279.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 429aa MW: 47778.3 Da PI: 7.7512

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.2	2.3e-41	118	268	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssg... 88 kkdrhski T +g+RdRR+Rls+e+a++fFdLqd+LGfdk+skt++WL++++ +aik+lt+ + a+s +ssas+ g RWR83279.1 118 SKKDRHSKIFTRQGPRDRRMRLSLEIAREFFDLQDMLGFDKASKTVDWLMTNSREAIKKLTRGlsrangggsgT--------AKSTVSSASE---Gevv 205 69**********************************************************976666664321........2222222221...1112 PP TCP 89 .................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 k+a+++aks++++++a +++ ++ke ra arararert+ k++++ k RWR83279.1 206 sgfvespgnpncrkekaKEATQKAKSSRPSRKA-AFNPPSKEWRAIARARARERTKTKKMMNMK 268 333334455677776534444444444444444.4778888*************99999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MFPSAPVNGV LHADAVQYPF DHGSPCYRND FSSSFFPYFS SPIDEGDGEP LLHHQQDFLD 60 DHFPQHQLLM TNATNPPTAE AISNTTPEPK LLPGCFMGPP QNFFPRKKIS SLGRKRGSKK 120 DRHSKIFTRQ GPRDRRMRLS LEIAREFFDL QDMLGFDKAS KTVDWLMTNS REAIKKLTRG 180 LSRANGGGSG TAKSTVSSAS EGEVVSGFVE SPGNPNCRKE KAKEATQKAK SSRPSRKAAF 240 NPPSKEWRAI ARARARERTK TKKMMNMKVD ESDQMPNPIN SYEYEPNQLA TYSSPQETGD 300 QEPGSQTGDK KYPSELLAEV EQLPSLSLDH QSSLHEAAAA ADDSLSILQY HPPLSISIGL 360 TSDDLISLQS NEFNNFLQQN WELDSMRPNS GYVIPNAHLS ADNLQDRVSS PLFKMPTVRL 420 HYGNSSQVN

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MFPSAPVNGV LHADAVQYPF DHGSPCYRND FSSSFFPYFS SPIDEGDGEP LLHHQQDFLD  60
DHFPQHQLLM TNATNPPTAE AISNTTPEPK LLPGCFMGPP QNFFPRKKIS SLGRKRGSKK  120
DRHSKIFTRQ GPRDRRMRLS LEIAREFFDL QDMLGFDKAS KTVDWLMTNS REAIKKLTRG  180
LSRANGGGSG TAKSTVSSAS EGEVVSGFVE SPGNPNCRKE KAKEATQKAK SSRPSRKAAF  240
NPPSKEWRAI ARARARERTK TKKMMNMKVD ESDQMPNPIN SYEYEPNQLA TYSSPQETGD  300
QEPGSQTGDK KYPSELLAEV EQLPSLSLDH QSSLHEAAAA ADDSLSILQY HPPLSISIGL  360
TSDDLISLQS NEFNNFLQQN WELDSMRPNS GYVIPNAHLS ADNLQDRVSS PLFKMPTVRL  420
HYGNSSQVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-28	TCP family protein