PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83152.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 572aa MW: 62011.9 Da PI: 5.6004

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.3	1.2e-14	244	279	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cgt++ Tp +Rrgp g+ktLCnaCGl++++k RWR83152.1 244 CLQCGTSEkaTPVMRRGPAGPKTLCNACGLKWAHKM 279 89******************************9875 PP
2	TCP	102.5	7.3e-32	355	451	8	97
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaksaaks 97 +++ hTkv+gR+RR+ ++a+caar+F+L++eLG+++d++ti WLl+q +pai+++tgt++ +a ++ + +s ++n++ ++++++++++ RWR83152.1 355 SKDKHTKVEGRGRRIQMPATCAARIFQLTKELGHKSDGQTIRWLLEQTEPAIIAATGTGTVPAIATyvdgtlkIPTQSPFGDDNDRRRRKRTFNTNT 451 79********************************************************888885554322222222222222233333444444433 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MSHTSLNPKP LNSRPPMYVD EAGHVHVSDQ INDDGDAGDP SDSQYDGDVL EDGGGDEMMD 60 GDGDGDEEED DEEEDEEEDE IPIDGETIPD PNLAVPLRFR SMNQLTLSFN GEVYVYPSVS 120 PDKVQAVLLL LGGREVASLM PGMQLVSSEQ DNRGGVLVDS GDGFQSSNIP QRVASLLRFR 180 EKRKERCYEK KIRYNCRKEV ALRMQRHKGQ FACKAPTGEV VSASSTWESK QCQSQNDTPK 240 EAVCLQCGTS EKATPVMRRG PAGPKTLCNA CGLKWAHKME AKKQEIKKEE REIEQRLGVK 300 GCSISEDGLS TIPVQIASPL STPQLAAQQL VCLKMEPVVE KRRMEYVPLR PGRASKDKHT 360 KVEGRGRRIQ MPATCAARIF QLTKELGHKS DGQTIRWLLE QTEPAIIAAT GTGTVPAIAT 420 YVDGTLKIPT QSPFGDDNDR RRRKRTFNTN TPQIQEKSSI TSGLAPIIPS TPATQNIVSL 480 GNLGNLGTQT FLMISPNAIA GPSNQPQVWT FPAPTGPLIN LSAAARPIST VFSVVPGLNL 540 ATAVEIPAST GNASIPMAAG TSSTHVVKSS SK

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MSHTSLNPKP LNSRPPMYVD EAGHVHVSDQ INDDGDAGDP SDSQYDGDVL EDGGGDEMMD  60
GDGDGDEEED DEEEDEEEDE IPIDGETIPD PNLAVPLRFR SMNQLTLSFN GEVYVYPSVS  120
PDKVQAVLLL LGGREVASLM PGMQLVSSEQ DNRGGVLVDS GDGFQSSNIP QRVASLLRFR  180
EKRKERCYEK KIRYNCRKEV ALRMQRHKGQ FACKAPTGEV VSASSTWESK QCQSQNDTPK  240
EAVCLQCGTS EKATPVMRRG PAGPKTLCNA CGLKWAHKME AKKQEIKKEE REIEQRLGVK  300
GCSISEDGLS TIPVQIASPL STPQLAAQQL VCLKMEPVVE KRRMEYVPLR PGRASKDKHT  360
KVEGRGRRIQ MPATCAARIF QLTKELGHKS DGQTIRWLLE QTEPAIIAAT GTGTVPAIAT  420
YVDGTLKIPT QSPFGDDNDR RRRKRTFNTN TPQIQEKSSI TSGLAPIIPS TPATQNIVSL  480
GNLGNLGTQT FLMISPNAIA GPSNQPQVWT FPAPTGPLIN LSAAARPIST VFSVVPGLNL  540
ATAVEIPAST GNASIPMAAG TSSTHVVKSS SK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	1e-46	GATA family protein