PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82905.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 282aa MW: 31627.5 Da PI: 8.1629

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82905.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.9e-19	131	185	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k RWR82905.1 131 RKKLRLTKEQSALLEDNFKEHSTLNPKQKQALAMQLNLRPRQVEVWFQNRRARTK 185 788899***********************************************98 PP
2	HD-ZIP_I/II	123.3	1.1e-39	131	220	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLE++F+e+++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++++keen+rL++e +eL+ +l RWR82905.1 131 RKKLRLTKEQSALLEDNFKEHSTLNPKQKQALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETIKEENRRLQREIHELK-AL 220 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MGGLEDICNT GLVLGLGYEG KGDNGFKSMM NHQQRNRCHE FDRSGPTASP EMSLSLSLAH 60 DASIKIDLEK AYDQVQVIRQ SSPQSTITSF SNANHEIVSI KRERDVGCED VEYLERQSSR 120 ASDEDDDGGA RKKLRLTKEQ SALLEDNFKE HSTLNPKQKQ ALAMQLNLRP RQVEVWFQNR 180 RARTKLKQTE VDCEFLKRCC ETIKEENRRL QREIHELKAL KFASPVYMHL PAATLTMCPS 240 CERVGGGGGG GGNNSSTKGP FAVAPRSHHT YNPFSYHPSR AC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	188	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-84	HD-ZIP family protein