PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82865.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 722aa MW: 79260 Da PI: 9.5728

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.5e-12	10	59	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 +WTt+E++ll+ av+++G+++W++Ia +++ + +t+ +ck +++ RWR82865.1 10 NWTTWEELLLAFAVNRHGTKSWDSIAIEIQnrtsssLLLTASNCKQKYHE 59 7*****************************99999988999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MSRTEDPNAN WTTWEELLLA FAVNRHGTKS WDSIAIEIQN RTSSSLLLTA SNCKQKYHEL 60 QLRFKAVDDK TNGVDDESDN CDDKIPWLDE LRELRVAELR REVQRYDVSI VSLQSKVKKL 120 KEDREQSSKE TDNDDGKPDL EKEGAENERD AEKRDYEGEK RSKPSSGNDS DRENQSFNES 180 NSTDSKYRNP EIEIGTDENN RKTEERFPKP EQEAEAEAGS RKPTDPDVPG GESPADEAAG 240 EGSYNGSSDT IAKGAVVSSA VKSPAKASVP EVGESAEFHE SVAESKGGEE GMKENSDVQS 300 SASLSRKKRR KEDATGSSSG DEPEPDEVSP VSERISVKSH PLVGFLEIIR SHKHGSVFER 360 RLESQESARY HSIIRQHLDL EMVRTKLEEG LYSDRSPEFY RDLLLLFNNA IVFFPRNSPE 420 SVAASNLRDI VSKEVRRSFP KSSPPSKEPA PSSLSLPKSA PETSNSLPAK PNSSAPTTAL 480 GKRSSASTKA QPIVQTVLVD EKHEAVEPKE PERSSPANLG AVEGRVTKKR TRERSSSVAR 540 GTRTNNTTRS NNNHNSISTT RVTNPIPNPS SNSNSTVKVA APNENSEAKL EKKGAANSAV 600 VAKKRSAASF LNRMKRSLSS STTTERTLFD SLKSPINNST TSGGGGSEQK KKGGGSGRGD 660 GRRDSSLRQS SAKQMEEQKS QAGKRSVGRP PKRAAPPVQT SSSRRAKETE AKHPPPRKRA 720 RR

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MSRTEDPNAN WTTWEELLLA FAVNRHGTKS WDSIAIEIQN RTSSSLLLTA SNCKQKYHEL  60
QLRFKAVDDK TNGVDDESDN CDDKIPWLDE LRELRVAELR REVQRYDVSI VSLQSKVKKL  120
KEDREQSSKE TDNDDGKPDL EKEGAENERD AEKRDYEGEK RSKPSSGNDS DRENQSFNES  180
NSTDSKYRNP EIEIGTDENN RKTEERFPKP EQEAEAEAGS RKPTDPDVPG GESPADEAAG  240
EGSYNGSSDT IAKGAVVSSA VKSPAKASVP EVGESAEFHE SVAESKGGEE GMKENSDVQS  300
SASLSRKKRR KEDATGSSSG DEPEPDEVSP VSERISVKSH PLVGFLEIIR SHKHGSVFER  360
RLESQESARY HSIIRQHLDL EMVRTKLEEG LYSDRSPEFY RDLLLLFNNA IVFFPRNSPE  420
SVAASNLRDI VSKEVRRSFP KSSPPSKEPA PSSLSLPKSA PETSNSLPAK PNSSAPTTAL  480
GKRSSASTKA QPIVQTVLVD EKHEAVEPKE PERSSPANLG AVEGRVTKKR TRERSSSVAR  540
GTRTNNTTRS NNNHNSISTT RVTNPIPNPS SNSNSTVKVA APNENSEAKL EKKGAANSAV  600
VAKKRSAASF LNRMKRSLSS STTTERTLFD SLKSPINNST TSGGGGSEQK KKGGGSGRGD  660
GRRDSSLRQS SAKQMEEQKS QAGKRSVGRP PKRAAPPVQT SSSRRAKETE AKHPPPRKRA  720
RR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	312	RKKRRKE
2	307	311	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	3e-59	MYB_related family protein