PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82674.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 1262aa MW: 139176 Da PI: 6.965

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.6	4.2e-22	275	376	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l+ RWR82674.1 275 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKSQLL 370 99***************************9445444.38**********************************************..45677789 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ RWR82674.1 371 LGIRRA 376 999997 PP
2	Auxin_resp	120.4	1.4e-39	401	484	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+ RWR82674.1 401 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAIYsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 484 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1262 aa Download sequence
MVDPVPNAIR RRWNRIRTRN RNKNHIWDGS GSEFGVSLGA AAAAVRVREL ELSSRYATLS 60 APFPFTDSSL SFLSCVGETP RLEIPSDTLS ATFSALKRQF GPRNAPIFLG RSDIQLESSI 120 SLRNGSCDGP PAVSKANIGR EDAGIRTMKI PAAGVAANPC DGERKSSINP ELWHACAGPL 180 VTLPPVGSYV VYFPQGHSEQ VAASMQKDAD AQIPNYPTLP SKLICYLHSV TLHADAETDE 240 VYAQMTLQPV NTYEKEALLA SDLALKSNKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI 300 FPPLDFSMQP PAQELVAKDL HDNAWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL 360 FIRDEKSQLL LGIRRANRQP ANISSSVLSS DSMHIGILAA AAHAAANNSP FTIFYNPRAS 420 PSEFVIPLAK YNKAIYSNQI SLGMRFRMMF ETEESGTRRY MGTITGISDL DPLRWKNSQW 480 RNLQVAWDES TAGERRNRVS VWEIEPVAAP FFICPPPFFR SKRPRQPGMP DDDSSDMENL 540 FKRAMPWLGD EICIKDPQSQ NVVLPGLSLM QWMNMQQNPV LANSTMQPDY LRPMTGPVLQ 600 NLAATDMPRQ LGMQAHILQQ NNLQFSSPRS SQQSQQVEQL PKLPDTLNQL GSVNRLQQQM 660 DGINQQQRQH LVNQALPQNQ TQTQLLEPQI LAQNFVQQQQ QPPLIQNHQP QANLFPNQLP 720 QQQPQSNIAL NQQQNRTPVQ LSHQANQQLQ LSEHQIKLQL LQKLHQQQQS VLSQSALQQP 780 QLTQLQEQQR LLMGAQQQLS NPNLLSQQHV IPSQMAKNTQ ADIRSSQPMQ HQPQQKLQKQ 840 SLMLPELPGS VLPPPPPTNL LSTPSSCLLP NGAQSGITDD IPSCSTSPST NNCPIIPQSI 900 LNRTHRGTFI MDDISQAAAT VLSPGTLEAM TTGPNLAMDL QKSDIHMKPS MPISKTQGQG 960 TAPQTYPSTP QMDCLDTSSS GTSVCISQTD GQLQQNFPLS AFNPQAMFRD TAQDGDGPAD 1020 PRNNVLFGVN IEGPLGIPLT PDPLVAKSMG SGRDLQNHLS SENVVTNYGS SKDVQQELSS 1080 SIVSQSFGAP GMAFNPGVPI DSNINDGSLL NGGSWPPPPQ PQFQRMRTFT KVYKRGAVGR 1140 SVDITRYTGY DELKQDLARM FGIEGQLEDR QRIGWKLVYV DHETDVLLVG DDPWEEFVNC 1200 VRYIKILSPQ EVQQMSLDGD FGNGVLPNQA CSSSDGGNAW RGGGSGHCDQ NSGNPSAGSY 1260 DH

Sequence ? help Back to Top

Protein Sequence Length: 1262 aa Download sequence

MVDPVPNAIR RRWNRIRTRN RNKNHIWDGS GSEFGVSLGA AAAAVRVREL ELSSRYATLS  60
APFPFTDSSL SFLSCVGETP RLEIPSDTLS ATFSALKRQF GPRNAPIFLG RSDIQLESSI  120
SLRNGSCDGP PAVSKANIGR EDAGIRTMKI PAAGVAANPC DGERKSSINP ELWHACAGPL  180
VTLPPVGSYV VYFPQGHSEQ VAASMQKDAD AQIPNYPTLP SKLICYLHSV TLHADAETDE  240
VYAQMTLQPV NTYEKEALLA SDLALKSNKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI  300
FPPLDFSMQP PAQELVAKDL HDNAWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL  360
FIRDEKSQLL LGIRRANRQP ANISSSVLSS DSMHIGILAA AAHAAANNSP FTIFYNPRAS  420
PSEFVIPLAK YNKAIYSNQI SLGMRFRMMF ETEESGTRRY MGTITGISDL DPLRWKNSQW  480
RNLQVAWDES TAGERRNRVS VWEIEPVAAP FFICPPPFFR SKRPRQPGMP DDDSSDMENL  540
FKRAMPWLGD EICIKDPQSQ NVVLPGLSLM QWMNMQQNPV LANSTMQPDY LRPMTGPVLQ  600
NLAATDMPRQ LGMQAHILQQ NNLQFSSPRS SQQSQQVEQL PKLPDTLNQL GSVNRLQQQM  660
DGINQQQRQH LVNQALPQNQ TQTQLLEPQI LAQNFVQQQQ QPPLIQNHQP QANLFPNQLP  720
QQQPQSNIAL NQQQNRTPVQ LSHQANQQLQ LSEHQIKLQL LQKLHQQQQS VLSQSALQQP  780
QLTQLQEQQR LLMGAQQQLS NPNLLSQQHV IPSQMAKNTQ ADIRSSQPMQ HQPQQKLQKQ  840
SLMLPELPGS VLPPPPPTNL LSTPSSCLLP NGAQSGITDD IPSCSTSPST NNCPIIPQSI  900
LNRTHRGTFI MDDISQAAAT VLSPGTLEAM TTGPNLAMDL QKSDIHMKPS MPISKTQGQG  960
TAPQTYPSTP QMDCLDTSSS GTSVCISQTD GQLQQNFPLS AFNPQAMFRD TAQDGDGPAD  1020
PRNNVLFGVN IEGPLGIPLT PDPLVAKSMG SGRDLQNHLS SENVVTNYGS SKDVQQELSS  1080
SIVSQSFGAP GMAFNPGVPI DSNINDGSLL NGGSWPPPPQ PQFQRMRTFT KVYKRGAVGR  1140
SVDITRYTGY DELKQDLARM FGIEGQLEDR QRIGWKLVYV DHETDVLLVG DDPWEEFVNC  1200
VRYIKILSPQ EVQQMSLDGD FGNGVLPNQA CSSSDGGNAW RGGGSGHCDQ NSGNPSAGSY  1260
DH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein