PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82035.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 364aa MW: 38440.5 Da PI: 8.6253

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.7	7.2e-41	75	193	3	116
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqq+++ai+++tgt++++a+++ ++s +ssas+ s++ RWR82035.1 75 ATKRSSKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKTDGETIEWLLQQSEHAIIAATGTGTIPANFTsLNVSLRSSASSLSKSaphsfhsaishl 173 689*****************************************************************9998777777777755555544333333333 PP TCP 89 ..............kaaksaakskksqksaasalnlakesr..a 116 + ++ + RWR82035.1 174 gfshhpqnllhlssD------------------------QNlrE 193 332222222222211........................11111 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MEQQADHGRG IGSEKLNSTS SSEQQQQQQQ QLVVVQRGGA GGPPSSSSSG GPSTLDAGLA 60 ITTRSNDRKQ QLAVATKRSS KDRHTKVDGR GRRIRMPATC AARVFQLTRE LGHKTDGETI 120 EWLLQQSEHA IIAATGTGTI PANFTSLNVS LRSSASSLSK SAPHSFHSAI SHLGFSHHPQ 180 NLLHLSSDQN LREEDGSSAA KSATTHLQLH RQHQDPGPLR PPNVLPAAAA MWAVASPAPT 240 SAGGGAFWML PVTTASTGPT MAAAAGPSEP SIWTFPAAGQ FQTSIQAAGQ APLHFMPRIE 300 FQATPQQHLG LGISDANLGM LAALNTFRRG GLNVNSEQNQ PLDHNQVHHH QGADSGDDPQ 360 TSSQ

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MEQQADHGRG IGSEKLNSTS SSEQQQQQQQ QLVVVQRGGA GGPPSSSSSG GPSTLDAGLA  60
ITTRSNDRKQ QLAVATKRSS KDRHTKVDGR GRRIRMPATC AARVFQLTRE LGHKTDGETI  120
EWLLQQSEHA IIAATGTGTI PANFTSLNVS LRSSASSLSK SAPHSFHSAI SHLGFSHHPQ  180
NLLHLSSDQN LREEDGSSAA KSATTHLQLH RQHQDPGPLR PPNVLPAAAA MWAVASPAPT  240
SAGGGAFWML PVTTASTGPT MAAAAGPSEP SIWTFPAAGQ FQTSIQAAGQ APLHFMPRIE  300
FQATPQQHLG LGISDANLGM LAALNTFRRG GLNVNSEQNQ PLDHNQVHHH QGADSGDDPQ  360
TSSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-38	TCP family protein