PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81413.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

NAC

Protein Properties

Length: 370aa MW: 42782.6 Da PI: 5.5531

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.3	3.8e-33	23	146	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 ppG+rF P d el+++yLk+k +g +l++ +i+ vd+y+++P++L++ k+ a ++e y+F++r +k+++g++ +r++ +gyWk+t kd +++++k+ RWR81413.1 23 PPGLRFCPYDRELIQYYLKNKNDGVSLHI--HIPVVDLYNCHPERLQEgdfKY-AIHNEKYYFTRRVRKNKRGSQVKRSMVEGYWKTTSKDIDITDEKN 118 9*********************99888..7**********9444333.346799*********************************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyr 127 +++g k + f++g+++k t+W+mhe+r RWR81413.1 119 NKIGYLKKFKFFEGKDKK--PTNWLMHEFR 146 ********999999..7******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MASGECPSSL IVSERQCEEA EFPPGLRFCP YDRELIQYYL KNKNDGVSLH IHIPVVDLYN 60 CHPERLQEGD FKYAIHNEKY YFTRRVRKNK RGSQVKRSMV EGYWKTTSKD IDITDEKNNK 120 IGYLKKFKFF EGKDKKPTNW LMHEFRDLHT VSAMDATTST ENWTNRYVLC KIYEKRQKHS 180 TDSPTFTSVI EEVRESSIPE NNPIASQPHQ TSSLLLNTIQ FQTQSDDNNI QHHLSTEVGL 240 PIHPADGTFN EFSVSQELLD CNDNGAEGSS IPQNTSTASH PHPTGLLLQN MNQFCKKDYQ 300 SIIQDNPSTK EGLAMHRDEN IGNIHEFFVS QELLDYDIND PLRYWNEPSG EEMQLFSVNT 360 DTMFSGPWSY

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MASGECPSSL IVSERQCEEA EFPPGLRFCP YDRELIQYYL KNKNDGVSLH IHIPVVDLYN  60
CHPERLQEGD FKYAIHNEKY YFTRRVRKNK RGSQVKRSMV EGYWKTTSKD IDITDEKNNK  120
IGYLKKFKFF EGKDKKPTNW LMHEFRDLHT VSAMDATTST ENWTNRYVLC KIYEKRQKHS  180
TDSPTFTSVI EEVRESSIPE NNPIASQPHQ TSSLLLNTIQ FQTQSDDNNI QHHLSTEVGL  240
PIHPADGTFN EFSVSQELLD CNDNGAEGSS IPQNTSTASH PHPTGLLLQN MNQFCKKDYQ  300
SIIQDNPSTK EGLAMHRDEN IGNIHEFFVS QELLDYDIND PLRYWNEPSG EEMQLFSVNT  360
DTMFSGPWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	90	RRVRKNK
2	87	128	RKNKRGSQVKRSMVEGYWKTTSKDIDITDEKNNKIGYLKKFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46590.1	2e-24	NAC family protein