PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80928.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 240aa MW: 27396.1 Da PI: 9.4158

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.6	2.1e-30	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gk++e+ RWR80928.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKVFEF 57 79**********************************************9 PP
2	K-box	104.2	1.7e-34	80	171	8	99
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++ +++s++qe++kLk+++e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l++ R+++++l+leqieel+kke +l e nk+L++kle RWR80928.1 80 NITDGETQSWYQEVSKLKSKYESLQRSQRHLLGEDLGPLSVKELQRLERQLEVALSQARQRRTQLMLEQIEELRKKECQLGEMNKQLKSKLE 171 4678899***********************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFSS RGKVFEFGNA 60 GVNKTLERYR RCCYNPHDAN ITDGETQSWY QEVSKLKSKY ESLQRSQRHL LGEDLGPLSV 120 KELQRLERQL EVALSQARQR RTQLMLEQIE ELRKKECQLG EMNKQLKSKL EAGQGPFTTI 180 QGTWDAGAIV GNNTFSVHPS QSTTMDCEPT TLQIGYHNFV SAEANLPRSS ESNFNPGWIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	141	RQLEVALSQARQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	3e-97	MIKC_MADS family protein