PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80927.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 24740.2 Da PI: 9.127

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80927.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.2	2.9e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCd+eva+iifs++gklye+s+ RWR80927.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDVEVALIIFSPRGKLYEFSN 59 8***********************************************95 PP
2	K-box	85.9	8.2e-29	80	173	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ e++ ++++ e+a++ k ie L+ ++R+llGe+L+s+s +eLqq+e++Le+sl+kiR +K++l++eqie+l++ke+ l e+n +L kk +e RWR80927.1 80 NEAPEENPQNWKLEAANMAKTIEFLEVSKRQLLGESLGSCSTEELQQIENKLEESLTKIRGRKSQLFREQIEQLKQKERILLEQNATLYKKHKE 173 4478999***********************************************************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD VEVALIIFSP RGKLYEFSNQ 60 GMEKTIDRYQ KHTKGISINN EAPEENPQNW KLEAANMAKT IEFLEVSKRQ LLGESLGSCS 120 TEELQQIENK LEESLTKIRG RKSQLFREQI EQLKQKERIL LEQNATLYKK HKEPPQPTNW 180 EKVGPCDPGT EDSEVETGLF IGRPERGSTL YLLQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	3e-79	MIKC_MADS family protein