PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80908.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 653aa MW: 74676.8 Da PI: 4.9486

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	105.2	4.7e-33	436	520	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev++Li++r++++ r+++ lk+plWeevs++m++ g++rs+k+Ckekwen+nk+++k+k+++kkr s+ s+tcpyf+ql+ RWR80908.1 436 RWPKAEVHVLIRVRSSLDLRFQEPGLKGPLWEEVSAAMASIGYQRSAKRCKEKWENINKYFRKTKDSAKKR-SQYSKTCPYFHQLD 520 8*******************************************************************8.88999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MQSGYGVPEF QQLLVDGCSS LLSMSHDINS SQPQKLHLQD PNHQHPHHHH QQQQQQQRFY 60 HFQPNSVTQQ FFQHPLQLQL LQQQQQRRFY QQLGLEQESG PDNSNSSSRD VGGGGVLPFI 120 VANFKLPDEN SGCREGLNDD ETVLVGSGGD SRVAIADHDR WQQQREEDTA IKEPFWIPLD 180 SEYINRNNKR CKDKEEVSNK FCKKDEERDE NEERKNSSSN FGLFRELEAI YTHGSLNGSG 240 GCTNQTGSGS ALTGENPVTT LAVPKPTCDP RNAIDHASET STGEEASLKK IKKNKRKRKR 300 MQLSSIAFFF ESLVKQLMAH QETLHMKFLE VMEKRDEERT KREEAWRQQE MVKAKREALA 360 RAEEQALASS REAAIVAFLE KITGETINLP TKTQFNSEVQ FHEDPQKEQN ANQVPEAINN 420 NNVSNENNNC SNNTRRWPKA EVHVLIRVRS SLDLRFQEPG LKGPLWEEVS AAMASIGYQR 480 SAKRCKEKWE NINKYFRKTK DSAKKRSQYS KTCPYFHQLD QLYSSSSKSS VAKDNSELLD 540 AIVVANDQNP SLEFDGPRFK FSEMGSQSLD FNDNVNEDSS AMAGHEEEDD NEEEENDDDE 600 EEEEEEEEDN DEQKAENDTG FGEDRLHTQK QGTNRVCGEK ETVKGTLFFR LES

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MQSGYGVPEF QQLLVDGCSS LLSMSHDINS SQPQKLHLQD PNHQHPHHHH QQQQQQQRFY  60
HFQPNSVTQQ FFQHPLQLQL LQQQQQRRFY QQLGLEQESG PDNSNSSSRD VGGGGVLPFI  120
VANFKLPDEN SGCREGLNDD ETVLVGSGGD SRVAIADHDR WQQQREEDTA IKEPFWIPLD  180
SEYINRNNKR CKDKEEVSNK FCKKDEERDE NEERKNSSSN FGLFRELEAI YTHGSLNGSG  240
GCTNQTGSGS ALTGENPVTT LAVPKPTCDP RNAIDHASET STGEEASLKK IKKNKRKRKR  300
MQLSSIAFFF ESLVKQLMAH QETLHMKFLE VMEKRDEERT KREEAWRQQE MVKAKREALA  360
RAEEQALASS REAAIVAFLE KITGETINLP TKTQFNSEVQ FHEDPQKEQN ANQVPEAINN  420
NNVSNENNNC SNNTRRWPKA EVHVLIRVRS SLDLRFQEPG LKGPLWEEVS AAMASIGYQR  480
SAKRCKEKWE NINKYFRKTK DSAKKRSQYS KTCPYFHQLD QLYSSSSKSS VAKDNSELLD  540
AIVVANDQNP SLEFDGPRFK FSEMGSQSLD FNDNVNEDSS AMAGHEEEDD NEEEENDDDE  600
EEEEEEEEDN DEQKAENDTG FGEDRLHTQK QGTNRVCGEK ETVKGTLFFR LES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	300	KKNKRKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	8e-41	Trihelix family protein