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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWR80565.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 320aa MW: 36895.9 Da PI: 4.4285 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.7 | 4.8e-19 | 85 | 138 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++++q++ Le+ Fe ++++ e++ +LA+ lgL+ rqV +WFqNrRa++k
RWR80565.1 85 KKRRLSADQVQFLERSFEVENKLEPERKIQLARDLGLQPRQVAIWFQNRRARWK 138
56689************************************************9 PP
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| 2 | HD-ZIP_I/II | 129.2 | 1.7e-41 | 84 | 174 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls++qv++LE+sFe e+kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdyeaLk++y++lk + e L ke+e+L++e+
RWR80565.1 84 EKKRRLSADQVQFLERSFEVENKLEPERKIQLARDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALKASYNTLKGDYEYLLKEKEKLKTEV 174
69*************************************************************************************9886 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 320 aa Download sequence |
MMAGERVYGG SNIAVMLQNE RIPCSGDALE ALLNSSSSSI FHGTRSMVSF EDVRGNTTDR 60 SFFRSLDHEE TGDEDLDECF HQPEKKRRLS ADQVQFLERS FEVENKLEPE RKIQLARDLG 120 LQPRQVAIWF QNRRARWKTK QLEKDYEALK ASYNTLKGDY EYLLKEKEKL KTEVLFLTDK 180 LLLKEKDREN SETSELNEPN LQSQKEVTTS VVAEVKDVPI IVPKQEDLSS ANSAVFDSDS 240 PHYTDGGYSS LLEPVDSSNI FEPDQSDLSH EEEEEDNLHR NLLPPTYHIP KLEDSIYLEP 300 PVNSCHYTIP VEDEPCWYWP |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 133 | 141 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01470.1 | 3e-40 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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