PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79597.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 366aa MW: 40811.9 Da PI: 9.8193

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.2	2e-40	114	267	4	135
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec....eaessss 80 + rhski T++g+RdRR+Rls+++a++fF Lqd+LGfdk+skti WL++++k+ai elt+ +s+s+ e+ ++++ RWR79597.1 114 NRERHSKIFTAQGLRDRRMRLSVDVARKFFGLQDMLGFDKASKTIGWLMTKSKTAINELTKGlsqsdgcggdsdggdqnlTSESED-IsgldETTADVN 211 689********************************************************9888888888887777654333332.235555555566 PP TCP 81 sasnsssgkaaksaakskksqksaa.salnlakesrakarararertrekmriknk 135 +++n+ ++k+ +a+k +++q s++ + akesra ara+arertrekm++k + RWR79597.1 212 QQENDLKQKSLVAAPKVNRNQGSKKvAICPAAKESRAIARAKARERTREKMSKKLD 267 666666667777777665555555404566677****************99855 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MFPFNHGKNC IPHSYDADQC LLGEQTFSRN EPTSSFIQFS PFLYHNSRFL NYEHELLSRH 60 LTKPPQMVST FTAITSVADV GANNTEMAVL GTTQKMLFCK KRSPVAVGRK RSSNRERHSK 120 IFTAQGLRDR RMRLSVDVAR KFFGLQDMLG FDKASKTIGW LMTKSKTAIN ELTKGLSQSD 180 GCGGDSDGGD QNLTSESEDI SGLDETTADV NQQENDLKQK SLVAAPKVNR NQGSKKVAIC 240 PAAKESRAIA RAKARERTRE KMSKKLDKSK QLPNGSTHGP YGLKPLSPLG FPRESSSRIS 300 HDKKSFELGG DINEPNKLGI STYDYYQHIL NSQGENSSGL VSFNNNGMMT FFPENWDMSS 360 MHKDTF

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MFPFNHGKNC IPHSYDADQC LLGEQTFSRN EPTSSFIQFS PFLYHNSRFL NYEHELLSRH  60
LTKPPQMVST FTAITSVADV GANNTEMAVL GTTQKMLFCK KRSPVAVGRK RSSNRERHSK  120
IFTAQGLRDR RMRLSVDVAR KFFGLQDMLG FDKASKTIGW LMTKSKTAIN ELTKGLSQSD  180
GCGGDSDGGD QNLTSESEDI SGLDETTADV NQQENDLKQK SLVAAPKVNR NQGSKKVAIC  240
PAAKESRAIA RAKARERTRE KMSKKLDKSK QLPNGSTHGP YGLKPLSPLG FPRESSSRIS  300
HDKKSFELGG DINEPNKLGI STYDYYQHIL NSQGENSSGL VSFNNNGMMT FFPENWDMSS  360
MHKDTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-24	TCP family protein