PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79594.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 365aa MW: 40451.4 Da PI: 9.6118

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.4	3e-39	114	266	4	135
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec....eaesssssa 82 + rhsk+ T++g+RdRR+Rls+++a++fF Lqd+LGfdk+skti WL++++k+ai lt+ s+s +++ e+ ++++++ RWR79594.1 114 NRERHSKVFTAQGLRDRRMRLSVDVARKFFGLQDMLGFDKASKTIGWLMTKSKTAINGLTKGlsqsdgcggdsdggenSTSESEDIsgldETTADVNQQ 212 689********************************************************98888888888887765333333335655455555555 PP TCP 83 snsssgkaaksaakskksqksa.asalnlakesrakarararertrekmriknk 135 +++ ++k+ +++k +++q + a+ akesra ara+arertrekm++k + RWR79594.1 213 EKDLKQKSLVATPKVNRNQGLKkATICPAAKESRAIARAKARERTREKMSKKLD 266 5555557777777666666555055566677****************99855 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MFPFNHGKNC IPHSYDADQC LLGEQTFSRN EPTSSFNQLS PFLDHNSRLL NYEHELLSRH 60 LTKPPQMVST SIAITSVADV GANNTEMAVL GTTQKMLFSE KSSPVAVGRK RSSNRERHSK 120 VFTAQGLRDR RMRLSVDVAR KFFGLQDMLG FDKASKTIGW LMTKSKTAIN GLTKGLSQSD 180 GCGGDSDGGE NSTSESEDIS GLDETTADVN QQEKDLKQKS LVATPKVNRN QGLKKATICP 240 AAKESRAIAR AKARERTREK MSKKLDKSKQ LPKGSNHGPY QLKSLIPLAL PGESSSRISH 300 DKKSFELDGE INEPNKLGLS TYDYYQHISN SQGENSSGLV SFNNNGMMTF FPENWDMSSM 360 HKDTF

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MFPFNHGKNC IPHSYDADQC LLGEQTFSRN EPTSSFNQLS PFLDHNSRLL NYEHELLSRH  60
LTKPPQMVST SIAITSVADV GANNTEMAVL GTTQKMLFSE KSSPVAVGRK RSSNRERHSK  120
VFTAQGLRDR RMRLSVDVAR KFFGLQDMLG FDKASKTIGW LMTKSKTAIN GLTKGLSQSD  180
GCGGDSDGGE NSTSESEDIS GLDETTADVN QQEKDLKQKS LVATPKVNRN QGLKKATICP  240
AAKESRAIAR AKARERTREK MSKKLDKSKQ LPKGSNHGPY QLKSLIPLAL PGESSSRISH  300
DKKSFELDGE INEPNKLGLS TYDYYQHISN SQGENSSGLV SFNNNGMMTF FPENWDMSSM  360
HKDTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	6e-24	TCP family protein