PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79593.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 365aa MW: 40539.5 Da PI: 9.4661

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131	1.1e-40	114	266	4	135
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec.....eaesssss 81 + rhski+T++g+RdRR+Rls+++a++fF Lqd+LGfdk+skti WL++++k+ai elt+ s +s+se e+ +++++ RWR79593.1 114 NRERHSKISTAQGLRDRRMRLSVDVARKFFGLQDMLGFDKASKTIGWLMTKSKTAINELTKGlsqsdgcggdsdggenS-ISESEDisgldETTADVNQ 211 689********************************************************988888888877777642.2222223555545555555 PP TCP 82 asnsssgkaaksaakskksqks.aasalnlakesrakarararertrekmriknk 135 ++++ ++k+ +a+k +++q s +a+ akesra ara+arertrekm++k + RWR79593.1 212 QEKDLKQKSLVAAPKVNRNQGSkKATICPAAKESRAIARAKARERTREKMSKKLD 266 55555557777777655555550555566777****************99855 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MFPFNHGKNC IPHSYDADQC LLGEQTFSRN EPTSSFNQLS PFLDHNSHLL NYEHELLSRH 60 LTKPPQMVST SIAITSVADV GANNTEMAVL GTTQKMLFSE KSSPVAIGRK RSSNRERHSK 120 ISTAQGLRDR RMRLSVDVAR KFFGLQDMLG FDKASKTIGW LMTKSKTAIN ELTKGLSQSD 180 GCGGDSDGGE NSISESEDIS GLDETTADVN QQEKDLKQKS LVAAPKVNRN QGSKKATICP 240 AAKESRAIAR AKARERTREK MSKKLDKSKQ LPKGSNHGPY QLKPLIPLRL LGESSSRISH 300 DKKSFELDGE INEPNKLGLS TYDYYQHISN SQGENSSGLV SFNNNGMMTF FPENWDMSSM 360 HKDTF

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MFPFNHGKNC IPHSYDADQC LLGEQTFSRN EPTSSFNQLS PFLDHNSHLL NYEHELLSRH  60
LTKPPQMVST SIAITSVADV GANNTEMAVL GTTQKMLFSE KSSPVAIGRK RSSNRERHSK  120
ISTAQGLRDR RMRLSVDVAR KFFGLQDMLG FDKASKTIGW LMTKSKTAIN ELTKGLSQSD  180
GCGGDSDGGE NSISESEDIS GLDETTADVN QQEKDLKQKS LVAAPKVNRN QGSKKATICP  240
AAKESRAIAR AKARERTREK MSKKLDKSKQ LPKGSNHGPY QLKPLIPLRL LGESSSRISH  300
DKKSFELDGE INEPNKLGLS TYDYYQHISN SQGENSSGLV SFNNNGMMTF FPENWDMSSM  360
HKDTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-24	TCP family protein