PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78962.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

WRKY

Protein Properties

Length: 591aa MW: 64351.9 Da PI: 8.2152

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.7e-33	255	311	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve+s d++++ei+Y+g+Hnh RWR78962.1 255 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVEKSL-DGQITEIVYKGTHNHA 311 8**************************************.*************7 PP
2	WRKY	105	3.9e-33	425	483	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver+++d ++v++tYeg+Hnh+ RWR78962.1 425 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHVERASHDLRAVITTYEGKHNHD 483 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence
MGSSTGSLET SANSQQAFSF TSQFMNTATN SSSNLMSSAD EDTDSRSRIP SGRGFSDRVG 60 GGSGGVPKFK SITPPSLPIS PPAVSPSSYF SIPAGLSPAE LLDSPVLLST NLLPSPTTGS 120 FPLQFNWRAN SGNYQQGVKK EERNCSDFSF QTHTRPATAP SSIFQSSAAT LSTVCFKMWP 180 SKDNSSHGII KNPTSELNFL PPRANIKSEY ATSMQGVSTE IPAMQSHMQS NCGFQTEFNQ 240 LTQAPQPYKE QRRSDDGYNW RKYGQKQVKG SENPRSYYKC TFPNCPTKKK VEKSLDGQIT 300 EIVYKGTHNH AKPQSTRRSS GSAASQAIPA SAGISDIHDH SFSGHTSTQM ESVATPDNSS 360 VSLGDDDFDK SSQLTKSGGD EFDEDEPDAK RWKKESENEG LSASASRTVR EPRVVVQTTS 420 DIDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSVGCPVRK HVERASHDLR AVITTYEGKH 480 NHDVPAARGS GSHLVNRPAT DNNMAVAIKP LATTNHTNNI MGNSHFGGRL QAPESQTPFT 540 LEMLRSPGSF GFSGFGNSMG SYMSQSQHTD ASFPKAKEEP RDDLFIESLL C

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence

MGSSTGSLET SANSQQAFSF TSQFMNTATN SSSNLMSSAD EDTDSRSRIP SGRGFSDRVG  60
GGSGGVPKFK SITPPSLPIS PPAVSPSSYF SIPAGLSPAE LLDSPVLLST NLLPSPTTGS  120
FPLQFNWRAN SGNYQQGVKK EERNCSDFSF QTHTRPATAP SSIFQSSAAT LSTVCFKMWP  180
SKDNSSHGII KNPTSELNFL PPRANIKSEY ATSMQGVSTE IPAMQSHMQS NCGFQTEFNQ  240
LTQAPQPYKE QRRSDDGYNW RKYGQKQVKG SENPRSYYKC TFPNCPTKKK VEKSLDGQIT  300
EIVYKGTHNH AKPQSTRRSS GSAASQAIPA SAGISDIHDH SFSGHTSTQM ESVATPDNSS  360
VSLGDDDFDK SSQLTKSGGD EFDEDEPDAK RWKKESENEG LSASASRTVR EPRVVVQTTS  420
DIDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSVGCPVRK HVERASHDLR AVITTYEGKH  480
NHDVPAARGS GSHLVNRPAT DNNMAVAIKP LATTNHTNNI MGNSHFGGRL QAPESQTPFT  540
LEMLRSPGSF GFSGFGNSMG SYMSQSQHTD ASFPKAKEEP RDDLFIESLL C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-115	WRKY family protein