PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78398.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 376aa MW: 40395.2 Da PI: 8.504

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.6	6.2e-40	58	153	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......k 89 +a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ + RWR78398.1 58 PAPKRVSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAPlkstyfN 153 58999*****************************************************************99977777777777544445322220 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MDGENGIRRP NFPLQLLERK EEDACSSSGY PSLAITPVTG GIRSSSTGLE ITELPKKPAP 60 KRVSTKDRHT KVEGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT 120 GTGTIPANFT SLNISLRSSG SSMSAPLKST YFNHTLAAQQ LRMRSEWERS LDDSQRRILL 180 PSIGFSSEST STFLNNNNIN QSIHAKQELR DPCLLLDVSG SGSDVGDTKR RRPEHDVQPH 240 QLGGYMLQPT PGPVAGAHGP ANFWMVTNPN NQGMSGEPMW TFPSVGNTAM YRGTMSSGLH 300 FMNFPTPMAL LPGQQLGGGT GVLGATEGHL GMLATLNSYR PFAGGAGGAS DPSPQMGLGS 360 HQHHGGDDRH DTTSQS

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MDGENGIRRP NFPLQLLERK EEDACSSSGY PSLAITPVTG GIRSSSTGLE ITELPKKPAP  60
KRVSTKDRHT KVEGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT  120
GTGTIPANFT SLNISLRSSG SSMSAPLKST YFNHTLAAQQ LRMRSEWERS LDDSQRRILL  180
PSIGFSSEST STFLNNNNIN QSIHAKQELR DPCLLLDVSG SGSDVGDTKR RRPEHDVQPH  240
QLGGYMLQPT PGPVAGAHGP ANFWMVTNPN NQGMSGEPMW TFPSVGNTAM YRGTMSSGLH  300
FMNFPTPMAL LPGQQLGGGT GVLGATEGHL GMLATLNSYR PFAGGAGGAS DPSPQMGLGS  360
HQHHGGDDRH DTTSQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	7e-50	TCP family protein