PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77922.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 345aa MW: 38593.7 Da PI: 8.2474

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.6e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl RWR77922.1 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.6	5.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ RWR77922.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQVRRA CALKQGLKKG KEDFTAPDAN NQNPYWPELP APMEGMAVPY PYQDPRLNDH 180 ALIRKLLIKL GGRLSGNDQP PSMEGMNLQW PLDISTTERL YENTINMFSS ASINSFTDTC 240 SSLPNNQFSR NGAGLSPMSQ GPSNFPMELS DMIYSNPHRL EGLLDCYYGV GVMNEGNGTN 300 SADESTSWGN IGSSVYPSPL SNCEGFHQEM LQECLLSEAK HMTSH

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQVRRA CALKQGLKKG KEDFTAPDAN NQNPYWPELP APMEGMAVPY PYQDPRLNDH  180
ALIRKLLIKL GGRLSGNDQP PSMEGMNLQW PLDISTTERL YENTINMFSS ASINSFTDTC  240
SSLPNNQFSR NGAGLSPMSQ GPSNFPMELS DMIYSNPHRL EGLLDCYYGV GVMNEGNGTN  300
SADESTSWGN IGSSVYPSPL SNCEGFHQEM LQECLLSEAK HMTSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-77	MYB family protein