PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR77451.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 542aa    MW: 59303.6 Da    PI: 5.813
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR77451.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.87.1e-1301605271373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv+lL++cA+ v+ gd ++a +l+ +++    + + g  + ++a yf  AL +rl++     ++a+pp +++    +e+   ++ f+e++P+lkf+h+t
  RWR77451.1 160 LVHLLMTCADSVQRGDIAMAGSLIDEMRLVltRVNVGCGIGKVAGYFIDALIRRLFS----PAQAVPPGSSA----AENEILYHHFYEACPYLKFAHFT 250
                 68***********************9998866888999******************9....44555555554....566677899************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++a+rl+++++++L+v
  RWR77451.1 251 ANQAILEAFDGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVAASRLDQVKPWMLQV 349
                 *************************************************************************************************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                   +Ea+aVn+v+qlhrll +++s +   ++d+vL  +++l+Pk+v+vveqea+hn+++Fl+rf+eal+yys++fdslea  + ++++++ + +++++re
  RWR77451.1 350 GAREAVAVNSVMQLHRLLGSDLSGSGsaPIDSVLGWIRGLKPKIVTVVEQEANHNQAEFLDRFTEALYYYSTMFDSLEAC-AVQQQQQKALAEMYIQRE 447
                 ******************998877666699***********************************************999.56777777888888**** PP

        GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 i+nvv+cega+r+erhe l+kW  r+ +aGF+p +l+++a kqa++ll  ++ +gy vee++g+l+lgW++rpL+++SaW
  RWR77451.1 448 ICNVVCCEGAARVERHEPLGKWVGRMVQAGFRPRHLGSNAFKQASMLLTLFSAHGYCVEEKEGCLTLGWHSRPLIAASAW 527
                 ******************************************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MGPYDSAIPN PTPSSSSSSS SPCAPVGKIS DIDGLLAGAG YRVRASDLCH VAQRLERLES  60
AMVSHAPEIS YLASEAVHHN PTDLASWVES MLTQLNPLPP HQPSDMSPDF SDITELRYMD  120
ELVPQLPVSL LDTYPSDPQL TPVVLAPSAA LDEEDSGIRL VHLLMTCADS VQRGDIAMAG  180
SLIDEMRLVL TRVNVGCGIG KVAGYFIDAL IRRLFSPAQA VPPGSSAAEN EILYHHFYEA  240
CPYLKFAHFT ANQAILEAFD GHDCVHVIDF NLMHGLQWPA LIQALALRPG GPPLLRLTGI  300
GPPSPDGRDS LREIGLRLAE LARSVNVRFA FRGVAASRLD QVKPWMLQVG AREAVAVNSV  360
MQLHRLLGSD LSGSGSAPID SVLGWIRGLK PKIVTVVEQE ANHNQAEFLD RFTEALYYYS  420
TMFDSLEACA VQQQQQKALA EMYIQREICN VVCCEGAARV ERHEPLGKWV GRMVQAGFRP  480
RHLGSNAFKQ ASMLLTLFSA HGYCVEEKEG CLTLGWHSRP LIAASAWHAT DYHDHDHDTI  540
LH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-136GRAS family protein