PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR77270.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family B3
Protein Properties Length: 286aa    MW: 32504.5 Da    PI: 9.9801
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR77270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-18361161399
                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++ l++p  f+++++gk ++  + +l++++gr+W+vk+  +  ++  ++++GW  Fv++n L+ g+++vF+++g+sef   vk+f k
  RWR77270.1  36 TQKLRIPPAFIKHFNGKVPC--ESILRSPTGRVWDVKV--NTVGNDLFFQNGWPAFVEENILQMGEVLVFTYQGNSEF--DVKMFGK 116
                 34589******888777666..799*************..999999****************************9999..8888866 PP
2B342.21.4e-132002821697
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E-SS.SEE..EEEEE CS
          B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...ldgr.sefelvvkvf 97 
                 + +p++f+++ g+ ++    + l d++g++W+vk+i + k+gr++l++GW   ++ang+ eg ++ ++    +gr +++ l+v++f
  RWR77270.1 200 MPVPRTFLDASGMGTKD--SVLLHDPKGKTWRVKVI-SMKDGRTILGSGWAALARANGILEGNVCGLEciiGKGRgKRRVLKVHIF 282
                 678*****999777555..5***************5.8888899***********************9643335555666666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MGRKRATTRR GRSSRPSERE TVRGTSFFKF LMLDYTQKLR IPPAFIKHFN GKVPCESILR  60
SPTGRVWDVK VNTVGNDLFF QNGWPAFVEE NILQMGEVLV FTYQGNSEFD VKMFGKNGCE  120
KEETSMIKKD ESSSGCEKEE ASEKHECGSY KEVAEEQLQE LFFESTNTCQ CLGKKKYSCP  180
FKIKHQHYTV SWRHRMLYKM PVPRTFLDAS GMGTKDSVLL HDPKGKTWRV KVISMKDGRT  240
ILGSGWAALA RANGILEGNV CGLECIIGKG RGKRRVLKVH IFHTGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-27B3 family protein