PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77068.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 265aa MW: 30344.6 Da PI: 4.5609

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.2e-20	60	113	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k RWR77068.1 60 KKRRLTQEQVNLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 113 5678*************************************************9 PP
2	HD-ZIP_I/II	134.8	2.9e-43	59	150	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l +++++L ke+e+Lr+++ RWR77068.1 59 EKKRRLTQEQVNLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLADHTNLAKENEKLRAKVV 150 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MESGHLIFDG SCRGSMFFGD QTFRGARSVM TMEEAFRKRP FFSSPEELEE VYYDEHLPEK 60 KRRLTQEQVN LLEKSFEAEN KLEPERKTQL AKKLGLQPRQ VAVWFQNRRA RWKTKQLERD 120 YDLLKSSYDS LLADHTNLAK ENEKLRAKVV SLSEKLQAQE VMDQQTHPPP EYVDGGVHTS 180 MKTKDGLSSG SGGSAVVDED SPQLIDSGDS YFPDDYPSCM RPVDGVQSEE EVGSDDSRSY 240 FSDVFAAPEQ PQQVEDEPLG WWVWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	116	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	9e-70	HD-ZIP family protein