PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77067.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 268aa MW: 30309.4 Da PI: 4.3174

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.4	1.6e-20	64	117	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e++++LAkklgL+ rqV vWFqNrRa++k RWR77067.1 64 KKRRLTQEQVHLLERSFESENKLEPEKKTQLAKKLGLQPRQVAVWFQNRRARWK 117 5678*************************************************9 PP
2	HD-ZIP_I/II	131.7	2.7e-42	63	154	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv+lLE+sFe+e+kLepe+K++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++y++l ++ +++ ke+e+Lr+e+ RWR77067.1 63 EKKRRLTQEQVHLLERSFESENKLEPEKKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKASYESLLTDYNSVAKENERLRAEVV 154 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MDSSRLVFDG SGRGNMFFFG SGDQTFLGGT RAMLTAEESF RKHPFFSSPE ELEEEYYDEQ 60 MPEKKRRLTQ EQVHLLERSF ESENKLEPEK KTQLAKKLGL QPRQVAVWFQ NRRARWKTKQ 120 LERDYDLLKA SYESLLTDYN SVAKENERLR AEVVSITVKL QAKEVIGQQT DPLLENAVGQ 180 IPTSMTAKDR LSSSSGGSAV VDEDSPQLID SGDSYFPDYP SCVGGVDGVP SEEEDGSDDS 240 RSYFSDAFVA AEQPQEEDGE PLAWWAWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-88	HD-ZIP family protein