PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76900.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 484aa MW: 52682.3 Da PI: 6.1581

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.6	2.3e-16	168	217	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g RWR76900.1 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHIAARAYDRAAIKFRG 217 78*****************......55**********************997 PP
2	AP2	40.4	7.5e-13	260	310	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g RWR76900.1 260 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 310 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MLDLNVVFDY TCEEEEEECS PETEKPLKAP GGHVDDSGTS NSSVVNVDGL GEEDSCSTHV 60 DRAAGGGTLL GFGFNILKRG SGVGGDEEDD RGYGEDNGVS LQSGFLTRQL FPAPERASGG 120 GLCSLPVSAS SAPSPATLHW GNLNCGPADV GPPAQVKKSR RGPRSRSSQY RGVTFYRRTG 180 RWESHIWDCG KQVYLGGFDT AHIAARAYDR AAIKFRGVEA DINFNLSDYD EDMKQMRNLS 240 KEEFIHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDNEVEAARA 300 YDKAAIKCNG REAVTNFEPS TYEGVVTPKA DNGGTDHNLD LNLGISTPSF AHDLSRNDSS 360 GFHFHYGSFE IPEAGKAKTD NFVSMGPPQC LSERPPVWSD VFSGFFPNFE ERMIEKRAKV 420 GPPPALSNWA WQLHGSTSMP LSSSAASSGF STATSTTAAL PLPPQPPPPS APHLHYPTQY 480 YYGS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MLDLNVVFDY TCEEEEEECS PETEKPLKAP GGHVDDSGTS NSSVVNVDGL GEEDSCSTHV  60
DRAAGGGTLL GFGFNILKRG SGVGGDEEDD RGYGEDNGVS LQSGFLTRQL FPAPERASGG  120
GLCSLPVSAS SAPSPATLHW GNLNCGPADV GPPAQVKKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHIAARAYDR AAIKFRGVEA DINFNLSDYD EDMKQMRNLS  240
KEEFIHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDNEVEAARA  300
YDKAAIKCNG REAVTNFEPS TYEGVVTPKA DNGGTDHNLD LNLGISTPSF AHDLSRNDSS  360
GFHFHYGSFE IPEAGKAKTD NFVSMGPPQC LSERPPVWSD VFSGFFPNFE ERMIEKRAKV  420
GPPPALSNWA WQLHGSTSMP LSSSAASSGF STATSTTAAL PLPPQPPPPS APHLHYPTQY  480
YYGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	2e-99	AP2 family protein