PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR74600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 434aa MW: 47861.1 Da PI: 8.8499 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.1 | 3.4e-09 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++ rtG C++G +C+F+H+p RWR74600.1 51 EEPDCAYYIRTGLCRFGMTCRFNHPP 76 5799********************97 PP | |||||||
2 | zf-CCCH | 40.2 | 5.7e-13 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ RWR74600.1 96 GQPECQYYLKTGTCKFGATCKFHHPR 121 5799********************96 PP | |||||||
3 | zf-CCCH | 31.8 | 2.3e-10 | 142 | 167 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rt +Ck+G++CkF+H++ RWR74600.1 142 GEKECAYYLRTLQCKFGSTCKFHHPQ 167 7899********************97 PP | |||||||
4 | zf-CCCH | 37.2 | 4.8e-12 | 302 | 327 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ RWR74600.1 302 DQPECQYYMKTGDCKFGAMCKFHHPR 327 689*********************96 PP | |||||||
5 | zf-CCCH | 40.6 | 4.2e-13 | 347 | 372 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++lC+f++r+G+Ck+G++CkF H+ RWR74600.1 347 PGEPLCNFYSRYGICKFGPNCKFDHP 372 589**********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence |
MESDDGIRIH GAAVIDGSSF SPSQLYEDRM WRKNMRPNEA IEFGPYPERP EEPDCAYYIR 60 TGLCRFGMTC RFNHPPNRML AVAAARIKGG YPERLGQPEC QYYLKTGTCK FGATCKFHHP 120 RDKAGIAGRV QSNTLGYPLR PGEKECAYYL RTLQCKFGST CKFHHPQPSN AMIPLRGSPV 180 YPPVHSPTAP GQQSYPGLSN WPLSRASFIP SPRWQGPSSY AQLILPQGVV PVAGWNAYPG 240 QMGSVSSSEN HQQTSGTSQI YGTSRQSEAT NATSQGLFYR SGSVPVGLYA LQRENVFPER 300 PDQPECQYYM KTGDCKFGAM CKFHHPRERL IPIPSCTLSP FGLPLRPGEP LCNFYSRYGI 360 CKFGPNCKFD HPVGFAYGFS TSPSAVPVVR HLLGSSSGMD AIPSSSERPA EAGTGKSRQP 420 SLSETRKMPS GDEN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-163 | C3H family protein |