PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR73981.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 276aa    MW: 30990.8 Da    PI: 7.1274
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR73981.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.6e-19128182256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tkeq   Le+ F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  RWR73981.1 128 RKKLRLTKEQSALLEDSFKEHSTLNPKQKQDLARRLNLRPRQVEVWFQNRRARTK 182
                 788899***********************************************98 PP
2HD-ZIP_I/II126.41.2e-40128217191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eL+ +l
   RWR73981.1 128 RKKLRLTKEQSALLEDSFKEHSTLNPKQKQDLARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLHKELQELK-AL 217
                  69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MGLDNLCNTG LVLGLGCESM ADDRSNSNNQ RQSSIIKFDN SLSMNLEPSL TLSLADNTYK  60
ALKEIDVNKV NEELLDIRQS SHTTVSSFSN ANHDLGSVKR ERDIGTEEGD LEKLLSRGSD  120
EDEDGSARKK LRLTKEQSAL LEDSFKEHST LNPKQKQDLA RRLNLRPRQV EVWFQNRRAR  180
TKLKQTEVDC EFLKRCCETL TDENRRLHKE LQELKALKFA SPLYMQLPAA TLTMCPSCER  240
IGGGGIAGEN STKGPFTIAP KPHHYYSPYT HSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-92HD-ZIP family protein