PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR73021.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 870aa MW: 95945.6 Da PI: 4.6642

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR73021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.8e-07	299	318	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC+ffar G+C G++CkF H RWR73021.1 299 LCDFFAR-GWCIKGSSCKFLH 318 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MSSALEQDYE DEMAKPSPSP EASSSDSDEN QGRDDNGEEE EEVEEEEEEE EGVDDDEEEE 60 EGVEEEEDEE EGHEKEEGDE SAQSSEDTSQ NVDSDKNDED PGATSLTLDK SRMSVVSHGQ 120 DIGGCGDDLP SVNQSKELAE KQFEEVCNVD DKNFIPAILG TSIAPDENKP LEKTNEVSML 180 VMRMSTGASG NIFQNDVSEI HKVVQDDGIA ISADNTKLLC VEEDEVVVGA LPRDGFGDCE 240 PRGISYSEKE MKNSQMENDV QSADDLKLNA SRSQTPQQRP RSLTPDDELD NTSKRPAILC 300 DFFARGWCIK GSSCKFLHQK PGFDNAGQWT KGNVVGTGEL VGSDYAGLRI GAERSRPSIS 360 VEPSNADNPP HLSERFLPHE FGQSRLHHMF HEGGKSSLFQ REDFFPRSYN SSLSIQDDFL 420 KFDSRGKGWS FGTPSSYQKL DPHLNTVGNH DIFHGNYPTA RMHHELPKGV HLNDEHFARG 480 STLFSPMHNA TPGCRPLSSG TFIPSRVYGD DNYMPHSTIQ NKQSQMSLPT AGHASTLNSS 540 LMPGFSTSLR SIYVSPSQLG TTSTRGSAPF SAEHFSAQNH SDYDKGLCID SRSASLPRSS 600 SPYYSRSESE DLPVSVGLRS KFHLYDWEPS VPFRSSFHCP PPHKSSPGSQ YDPLVDSISS 660 PFKTSTLSQG TLSYNTTQQQ PNGDAASARS RSPEYNAEKC LYSFHESREG SFDKNTCRQG 720 TGGYTTEEEL TGKLHIADVE TGTSVAKAVE SLGDHDHKVS SVNTDEVDLD GSAKHQMEKS 780 RHSKNAKATK LFHAALVDFV KELVKPSWRE GHLSKDSHKM IVKKAVDKVL STLRLHQIPN 840 TTESIKEYLS SSGPKLKKLV EGYVEKYAKS

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MSSALEQDYE DEMAKPSPSP EASSSDSDEN QGRDDNGEEE EEVEEEEEEE EGVDDDEEEE  60
EGVEEEEDEE EGHEKEEGDE SAQSSEDTSQ NVDSDKNDED PGATSLTLDK SRMSVVSHGQ  120
DIGGCGDDLP SVNQSKELAE KQFEEVCNVD DKNFIPAILG TSIAPDENKP LEKTNEVSML  180
VMRMSTGASG NIFQNDVSEI HKVVQDDGIA ISADNTKLLC VEEDEVVVGA LPRDGFGDCE  240
PRGISYSEKE MKNSQMENDV QSADDLKLNA SRSQTPQQRP RSLTPDDELD NTSKRPAILC  300
DFFARGWCIK GSSCKFLHQK PGFDNAGQWT KGNVVGTGEL VGSDYAGLRI GAERSRPSIS  360
VEPSNADNPP HLSERFLPHE FGQSRLHHMF HEGGKSSLFQ REDFFPRSYN SSLSIQDDFL  420
KFDSRGKGWS FGTPSSYQKL DPHLNTVGNH DIFHGNYPTA RMHHELPKGV HLNDEHFARG  480
STLFSPMHNA TPGCRPLSSG TFIPSRVYGD DNYMPHSTIQ NKQSQMSLPT AGHASTLNSS  540
LMPGFSTSLR SIYVSPSQLG TTSTRGSAPF SAEHFSAQNH SDYDKGLCID SRSASLPRSS  600
SPYYSRSESE DLPVSVGLRS KFHLYDWEPS VPFRSSFHCP PPHKSSPGSQ YDPLVDSISS  660
PFKTSTLSQG TLSYNTTQQQ PNGDAASARS RSPEYNAEKC LYSFHESREG SFDKNTCRQG  720
TGGYTTEEEL TGKLHIADVE TGTSVAKAVE SLGDHDHKVS SVNTDEVDLD GSAKHQMEKS  780
RHSKNAKATK LFHAALVDFV KELVKPSWRE GHLSKDSHKM IVKKAVDKVL STLRLHQIPN  840
TTESIKEYLS SSGPKLKKLV EGYVEKYAKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-31	C3H family protein