PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72731.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 698aa MW: 77683.8 Da PI: 10.4484

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.3	1.1e-10	21	71	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 +W t+E++ll++av+++G+++W+ +a +++ + + + +c+ +++++ RWR72731.1 21 PWNTWEELLLACAVNRHGTKSWDFVAMEVQsrvsspLLLNAHNCRQKYHDL 71 7*********************************99********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MAKPHQEIDH DHDHDLDLDH PWNTWEELLL ACAVNRHGTK SWDFVAMEVQ SRVSSPLLLN 60 AHNCRQKYHD LERRFMTVDP QSNGGDHTTT THEEKTVLWV QQLTKLRVAE LKRDVQRSDL 120 SIVSLQQRVK KLKEEREHSS QEKENENEKS DLHKCSKKIE GGADEERDGE SEKSSPVDDV 180 GKRISGVESE RGSNFSDPKC KTGEIGPEAV RKRDEAAETA AGDTDPVPGN PVGGEGSYDG 240 SSETARAANG EAASIPVPEA GDSAEFPESV AESEGGGGER AEKESSDVQS SASLSRKRRR 300 GKTAPGRSSG EEPDVDEVSP ARTQLSVKSQ RSDRLARLLE VIRSHKHGSV FERRLQSQES 360 TNYRNLIRQH VDLEMIKTKL DEGLYSNSSL QFFRDLLLLF NNSIVFFPKN STESLAAIEL 420 RDIISKKMIT VTRSRSKPIS NQKPHPPSKK PSPPTQPLPK LYPAQSPLRL PALEAKRNRP 480 DVGKPDPDRD NPDDNHPTRT DNLAKLRKRE RSSLGTRGAR GNINKSSRSS NGTLNNRVLS 540 SNSIAREARS LREDPTDKKR KKMEKENAIV KKNKKMEKEN ATVKKNSVAN FLNQMKRSSG 600 SSSPPVDPLK ESVNGRVRGR GELGKGGKGG EVLRRDQPVR HGSSGKKVQE KGNPGRRSVG 660 RPPKRGPPPQ KKMPPPPPRK AREKVEVVGK PHSKRARR

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MAKPHQEIDH DHDHDLDLDH PWNTWEELLL ACAVNRHGTK SWDFVAMEVQ SRVSSPLLLN  60
AHNCRQKYHD LERRFMTVDP QSNGGDHTTT THEEKTVLWV QQLTKLRVAE LKRDVQRSDL  120
SIVSLQQRVK KLKEEREHSS QEKENENEKS DLHKCSKKIE GGADEERDGE SEKSSPVDDV  180
GKRISGVESE RGSNFSDPKC KTGEIGPEAV RKRDEAAETA AGDTDPVPGN PVGGEGSYDG  240
SSETARAANG EAASIPVPEA GDSAEFPESV AESEGGGGER AEKESSDVQS SASLSRKRRR  300
GKTAPGRSSG EEPDVDEVSP ARTQLSVKSQ RSDRLARLLE VIRSHKHGSV FERRLQSQES  360
TNYRNLIRQH VDLEMIKTKL DEGLYSNSSL QFFRDLLLLF NNSIVFFPKN STESLAAIEL  420
RDIISKKMIT VTRSRSKPIS NQKPHPPSKK PSPPTQPLPK LYPAQSPLRL PALEAKRNRP  480
DVGKPDPDRD NPDDNHPTRT DNLAKLRKRE RSSLGTRGAR GNINKSSRSS NGTLNNRVLS  540
SNSIAREARS LREDPTDKKR KKMEKENAIV KKNKKMEKEN ATVKKNSVAN FLNQMKRSSG  600
SSSPPVDPLK ESVNGRVRGR GELGKGGKGG EVLRRDQPVR HGSSGKKVQE KGNPGRRSVG  660
RPPKRGPPPQ KKMPPPPPRK AREKVEVVGK PHSKRARR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	300	RKRRR
2	558	562	KKRKK
3	558	578	KKRKKMEKENAIVKKNKKMEK
4	559	579	KKRKKMEKENAIVKKNKKMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	3e-58	MYB_related family protein