PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72675.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 744aa MW: 80119.8 Da PI: 6.7109

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72675.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.2e-08	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg RWR72675.1 309 PCPEFRK-GACRRGDLCEYAHG 329 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MFGETEHPKL SSPPSPSPSP SPPPKTPLRE MNLSIETEDS FSSLLEFAAN NDFEGFKRSI 60 ERDPIAIDEI GLWYGRQKGS SQMVLKPRTP LMVAATYGSV DVLKLILSLS AADVNRTCST 120 DKSTALHCAA SGGSVNAVDT VRELMLAGAD PNLVDANGRR PSDVIVVSPK LPVVKAALEE 180 LLSAAAPMGE PQLRVSTAPS NSNSPPLLSS SPENCSPSSA SDSTSSPMMA KIHDLPASSA 240 SEKKEYPVDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PEFRKGACRR GDLCEYAHGV FECWLHPAQY RTRLCKDGTG CMRRVCFFAH 360 TSEELRPLYV STGSAVPSPR SASAAAAMDM AAAMSLLPGS PSSVSVMSPS PFTPSPMSPS 420 ANGISHSSLA WPQPNVPTLH LPGSNLQSSR LRSSLNARDI PSDEFSMLQD FDAQQPMLND 480 YSCFSSQARL NSAAGNRPAR SKTMNPSNLD DLFTAEISSS PRFSDQVASS VFSPSHKSAI 540 LNQFQQQQQS MLSPINTSVF SPKSGDQHLP SHSLLQASFG LPSPGRMSPR SVEAHSPMNS 600 RLAALAQQRE KQQQQLRSLS SRDLGSGASA AMGSAVNSWT KWGSPTGKLD WAVNGDELGK 660 FRRSSSFELG AGGEEPDVSW VQSLVKESPP EIKEKASAVA SSTVAASSTT GEGLNFSSNS 720 PLETIDHTVL GAWIEQFQLD QVVL

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MFGETEHPKL SSPPSPSPSP SPPPKTPLRE MNLSIETEDS FSSLLEFAAN NDFEGFKRSI  60
ERDPIAIDEI GLWYGRQKGS SQMVLKPRTP LMVAATYGSV DVLKLILSLS AADVNRTCST  120
DKSTALHCAA SGGSVNAVDT VRELMLAGAD PNLVDANGRR PSDVIVVSPK LPVVKAALEE  180
LLSAAAPMGE PQLRVSTAPS NSNSPPLLSS SPENCSPSSA SDSTSSPMMA KIHDLPASSA  240
SEKKEYPVDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGACRR GDLCEYAHGV FECWLHPAQY RTRLCKDGTG CMRRVCFFAH  360
TSEELRPLYV STGSAVPSPR SASAAAAMDM AAAMSLLPGS PSSVSVMSPS PFTPSPMSPS  420
ANGISHSSLA WPQPNVPTLH LPGSNLQSSR LRSSLNARDI PSDEFSMLQD FDAQQPMLND  480
YSCFSSQARL NSAAGNRPAR SKTMNPSNLD DLFTAEISSS PRFSDQVASS VFSPSHKSAI  540
LNQFQQQQQS MLSPINTSVF SPKSGDQHLP SHSLLQASFG LPSPGRMSPR SVEAHSPMNS  600
RLAALAQQRE KQQQQLRSLS SRDLGSGASA AMGSAVNSWT KWGSPTGKLD WAVNGDELGK  660
FRRSSSFELG AGGEEPDVSW VQSLVKESPP EIKEKASAVA SSTVAASSTT GEGLNFSSNS  720
PLETIDHTVL GAWIEQFQLD QVVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein