PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR72613.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 109aa MW: 12614.6 Da PI: 8.1158 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.7e-39 | 5 | 105 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaC +l+r+C++dC+lapyfp ++p++f+n+h+lFG+sn+l++l++l+++++ dam+s+v++A++r r Pv+G++g+i +lq +++q +++l+++++ RWR72613.1 5 ACAACNYLQRECTADCPLAPYFPPDRPQQFQNAHRLFGVSNILNILEQLDPSQKMDAMRSIVFQADIRKRYPVHGCLGIICQLQVRIRQFQQQLDEVNA 103 7**********************************************************************************************9998 PP DUF260 100 el 101 +l RWR72613.1 104 QL 105 75 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence |
MKSEACAACN YLQRECTADC PLAPYFPPDR PQQFQNAHRL FGVSNILNIL EQLDPSQKMD 60 AMRSIVFQAD IRKRYPVHGC LGIICQLQVR IRQFQQQLDE VNAQLSIYR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-38 | LBD family protein |