PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023007069.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 682aa MW: 74690.8 Da PI: 6.4559

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023007069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.6e-06	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_023007069.1 278 PCPEFRK-GACRQGDSCDYAHG 298 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence
MVCNGCNSNS VSPNFMMDGC NRNLGFCISV LLEFSATDDL IGFRSAVEED GHDIDEASLW 60 YGRVFGSKKM GYEERTPLMV AAMFGSLNVL SYIVHSGRVD VNRACGSDGA TALHCAVAGG 120 SAVADQVVKY LLDAFADVNV VDANGYRPGD LIAPDFTLAS LYSRRKALQQ LLKGYGNDED 180 VLGSSEMIFY ERETQEAREV LTPRVSRDGM EKKEYPVDHS LPDIKNGIYS TDEFRMYTFK 240 IKPCTRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGACRQG DSCDYAHGIF 300 ECWLHPAQYR TRLCKDETGC TRKVCFFAHK PEELRPLYAS TGSAVLSPRS ISGLSLDIPS 360 ISLLTLGSPS STPPLTPGVS SPLGGTMWQT QCNIAPPTLQ LPGSRLKAAL SARDMDLDAE 420 LLGLESQRCR QQQFMDELSC LPSPSRWNNG IPTPTSFPSP RSRNGELNGL GSMNPTNLEN 480 IYGSSVDPAL FPQLQGFSLD SVQSPSGMRQ SLNQSFLSNY ANSIGSPPAR SSQPFGHDSS 540 VSAAESLLSS RAAAFAKRSH SFIERGVVNR HSGHSPPATS TTFTPSNFPD WGSPNGKLDW 600 GIHGEELTKL RKSASFGLRS NSLATPAMHT SSSKPDVSWV QSLVNDAPTE NSLQLSIDEQ 660 KQLCHIDNGD SKLYMEQKQL VA

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence

MVCNGCNSNS VSPNFMMDGC NRNLGFCISV LLEFSATDDL IGFRSAVEED GHDIDEASLW  60
YGRVFGSKKM GYEERTPLMV AAMFGSLNVL SYIVHSGRVD VNRACGSDGA TALHCAVAGG  120
SAVADQVVKY LLDAFADVNV VDANGYRPGD LIAPDFTLAS LYSRRKALQQ LLKGYGNDED  180
VLGSSEMIFY ERETQEAREV LTPRVSRDGM EKKEYPVDHS LPDIKNGIYS TDEFRMYTFK  240
IKPCTRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGACRQG DSCDYAHGIF  300
ECWLHPAQYR TRLCKDETGC TRKVCFFAHK PEELRPLYAS TGSAVLSPRS ISGLSLDIPS  360
ISLLTLGSPS STPPLTPGVS SPLGGTMWQT QCNIAPPTLQ LPGSRLKAAL SARDMDLDAE  420
LLGLESQRCR QQQFMDELSC LPSPSRWNNG IPTPTSFPSP RSRNGELNGL GSMNPTNLEN  480
IYGSSVDPAL FPQLQGFSLD SVQSPSGMRQ SLNQSFLSNY ANSIGSPPAR SSQPFGHDSS  540
VSAAESLLSS RAAAFAKRSH SFIERGVVNR HSGHSPPATS TTFTPSNFPD WGSPNGKLDW  600
GIHGEELTKL RKSASFGLRS NSLATPAMHT SSSKPDVSWV QSLVNDAPTE NSLQLSIDEQ  660
KQLCHIDNGD SKLYMEQKQL VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-176	C3H family protein