PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023005558.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family YABBY
Protein Properties Length: 202aa    MW: 22324.2 Da    PI: 8.4069
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023005558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY207.84e-64191856168
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee....sastsv 96 
                     ss+++Cyv+Cn C+t+lavsvP +slfk+vtvrCGhC++ll vn++    ll++ +h  +++ ++ +     + +n+ +  ++ +     ++t+ 
  XP_023005558.1  19 SSDHLCYVHCNICDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGG-MLLPSPNH-FHAFPPSSTPFFTPNAHNFLEEISNPNpnfaMNQTDG 111
                     79****************************************998875.67899999.4566666444444444444433333330000333444 PP

           YABBY  97 sseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn.WahfPkihf 168
                        ++ +   ++vpr+p  ++rP ek+qrvPsaynrfikeeiqrika+nPdishreafsaaakn WahfP+ih+
  XP_023005558.1 112 IDLTMVTRVGNDVPRAPSnINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNqWAHFPHIHN 185
                     444557888999***99889*******************************************99********7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MSSFSLPTTF SQHPPPPPSS DHLCYVHCNI CDTVLAVSVP CASLFKTVTV RCGHCANLLP  60
VNMRGGMLLP SPNHFHAFPP SSTPFFTPNA HNFLEEISNP NPNFAMNQTD GIDLTMVTRV  120
GNDVPRAPSN INRPAEKKQR VPSAYNRFIK EEIQRIKAAN PDISHREAFS AAAKNQWAHF  180
PHIHNFGVPP PNNNNNNNNN TP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-54YABBY family protein