PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023005471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 33719.7 Da PI: 6.9704 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.6 | 1.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l ++ q+G+++W++I++ g+ R++k+c++rw +yl XP_023005471.1 14 RGQWTPEEDNKLSSYISQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 8.1e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ E++ +v+++ G++ W++Ia+ ++ gRt++++k++w++ XP_023005471.1 68 GQFSDMEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110 789******************.*********.***********97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence |
MGRIPCCEKE NVKRGQWTPE EDNKLSSYIS QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY 60 LRPDLKHGQF SDMEEQTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSAPP 120 QGAHLAEAAL GCFKDEMLHL LTKKCVDFQL QQANVPPGSS TGTYNHNNQN EKDGTVENIK 180 LGLSRAIQQS DLITPYKPWN STDATTTNLE GTSNCFPAST SGFQYLSPSF GNEGDVPSWS 240 QSMCTGSTCT AGEQQGQLHE ILEEHREELS EGGKERRNGT SIFSSDSVLW DLPCDDLMNP 300 VV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56110.1 | 6e-94 | MYB family protein |