PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023004036.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 772aa MW: 85189.8 Da PI: 6.9045

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023004036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22	2.8e-07	223	243	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+f+a+ G+C G++C+F H XP_023004036.1 223 AICDFYAK-GWCIKGSSCSFLH 243 68****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence
MRGIFIELDS RGHAQVPRKN VYLVDVCNDM DAKRHDKHLR SDTITTTENS EVNKLSSVGE 60 TESNGNIEFA RLSGEPLAKL VEQSHGECKK VESRKCPKDK ETEDQELTVD DKDVEALRNN 120 LPKDSGGSIY NSKVPLCNRG IINAKVSNGL SVTVEDSDIG LENHLVGGNI GSTNPEKEST 180 QTDMQLENGK NQMASRSAAS KKRTRKLSPG ADVNIEQKRP AAAICDFYAK GWCIKGSSCS 240 FLHIKDNAHG SDQHSEEHAG AVYLKKQVQP NQAGLQYSAD ASKSPVFHHP PNSSFLKDSS 300 LSLKFGISSE RTLPRDFTES KGWDVLHEKN KFLLHQREDP LLREHPDCQK LPSTSFDVSF 360 PLNREGSTAR NDQPPEFGPS SGGFAKLSVM EEPANVACPH LLNDYHSPVL RSSLNSNTTL 420 TKGGILSSRF TTSNDSFPFT PSSSASFFGA QKMFIIDGEH RVSMPASSFT RSSPFSPSES 480 DNSLINASMN SSDYKTKYSC DDWEPSEPFR PSFFIPSINT ASQYDPFLDS IELPRKVGGC 540 HNVSLDHQGR EEVSPLSTLH RASGNYMVPG SSKPEFNDDT SSLSSHNKAE DKNEKAGHVQ 600 GTDSLMLEAE IQGSSGIDGC NGSRTREDDH MGLIREKNVP KKMKTDTDGK INLSNIALHE 660 KESEAESDRQ LGDMDGKHLI DGNVHKESKA TRHFRSALIE LVKGILRPKW REGHLKKDVH 720 NTVVKKTLDK VLGTLQPFQV PTTVESVKQY LSSSRPKIEK LVEGYVSKYG KS

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence

MRGIFIELDS RGHAQVPRKN VYLVDVCNDM DAKRHDKHLR SDTITTTENS EVNKLSSVGE  60
TESNGNIEFA RLSGEPLAKL VEQSHGECKK VESRKCPKDK ETEDQELTVD DKDVEALRNN  120
LPKDSGGSIY NSKVPLCNRG IINAKVSNGL SVTVEDSDIG LENHLVGGNI GSTNPEKEST  180
QTDMQLENGK NQMASRSAAS KKRTRKLSPG ADVNIEQKRP AAAICDFYAK GWCIKGSSCS  240
FLHIKDNAHG SDQHSEEHAG AVYLKKQVQP NQAGLQYSAD ASKSPVFHHP PNSSFLKDSS  300
LSLKFGISSE RTLPRDFTES KGWDVLHEKN KFLLHQREDP LLREHPDCQK LPSTSFDVSF  360
PLNREGSTAR NDQPPEFGPS SGGFAKLSVM EEPANVACPH LLNDYHSPVL RSSLNSNTTL  420
TKGGILSSRF TTSNDSFPFT PSSSASFFGA QKMFIIDGEH RVSMPASSFT RSSPFSPSES  480
DNSLINASMN SSDYKTKYSC DDWEPSEPFR PSFFIPSINT ASQYDPFLDS IELPRKVGGC  540
HNVSLDHQGR EEVSPLSTLH RASGNYMVPG SSKPEFNDDT SSLSSHNKAE DKNEKAGHVQ  600
GTDSLMLEAE IQGSSGIDGC NGSRTREDDH MGLIREKNVP KKMKTDTDGK INLSNIALHE  660
KESEAESDRQ LGDMDGKHLI DGNVHKESKA TRHFRSALIE LVKGILRPKW REGHLKKDVH  720
NTVVKKTLDK VLGTLQPFQV PTTVESVKQY LSSSRPKIEK LVEGYVSKYG KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-32	C3H family protein