PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003208.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 722aa MW: 78775.3 Da PI: 8.0809

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	151	252	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023003208.1 151 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 242 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023003208.1 243 GELRLGIRRA 252 999**996 PP
2	Auxin_resp	106	4.4e-35	277	358	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023003208.1 277 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 358 689*****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE 120 PIEHKMQEEM TNDSEGEDFE GSEKTTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL 180 DYSQQRPSQE LVAKDLLGIK WKFRHIYRGQ PRRHLLTTGW SAFVNKKRLV SGDAVLFLRG 240 NDGELRLGIR RAAQLKGSYA FSNICSQQLN SSSIMDVVNA ISSKTSFSVY YNPRATSSQF 300 VLPFHKFLKS INHSFSAGMR FSLSFETDDA ADRRCTGRIT GVGDVDPIRW PGSRWRSLVV 360 RWDDVETKRH GRVSPWEIEP SGSVSVASNL VPPGLKRTRI GLSPTELEFP APNGIGASDF 420 GESLRFQKVL QGQEILGYST PINGDDNVRH PPEKRRSFPG VHGSGIALMR NGPRIPVTNS 480 ETPSRGFMFN ESFQFHKVLQ GQEIYPSPFF GIATATNEVK ASDGYGPVDS VPLSRSKDGW 540 PMTMQSENFL TRSSIPSVQV SSPSSVFMFQ QSMVPVQSFN SYNRGNFTEQ RTMNKSTSHN 600 SGTAFMTDHS TSTEVPQGMR PASLGVQKQL GLSHPSTTEP AFTGNKAGCR LFGFSLTEGK 660 NVGNTDKASP ATTPINAGTT SVLSSNSGLR CPLKSPLMSK VVGSNCTKGA VQYRFANCST 720 YY

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE  120
PIEHKMQEEM TNDSEGEDFE GSEKTTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL  180
DYSQQRPSQE LVAKDLLGIK WKFRHIYRGQ PRRHLLTTGW SAFVNKKRLV SGDAVLFLRG  240
NDGELRLGIR RAAQLKGSYA FSNICSQQLN SSSIMDVVNA ISSKTSFSVY YNPRATSSQF  300
VLPFHKFLKS INHSFSAGMR FSLSFETDDA ADRRCTGRIT GVGDVDPIRW PGSRWRSLVV  360
RWDDVETKRH GRVSPWEIEP SGSVSVASNL VPPGLKRTRI GLSPTELEFP APNGIGASDF  420
GESLRFQKVL QGQEILGYST PINGDDNVRH PPEKRRSFPG VHGSGIALMR NGPRIPVTNS  480
ETPSRGFMFN ESFQFHKVLQ GQEIYPSPFF GIATATNEVK ASDGYGPVDS VPLSRSKDGW  540
PMTMQSENFL TRSSIPSVQV SSPSSVFMFQ QSMVPVQSFN SYNRGNFTEQ RTMNKSTSHN  600
SGTAFMTDHS TSTEVPQGMR PASLGVQKQL GLSHPSTTEP AFTGNKAGCR LFGFSLTEGK  660
NVGNTDKASP ATTPINAGTT SVLSSNSGLR CPLKSPLMSK VVGSNCTKGA VQYRFANCST  720
YY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein