PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003110.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 859aa MW: 95555.7 Da PI: 8.7237

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	157	180	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 t lCr+fa G C++G+ C+F H++ XP_023003110.1 157 TQLCRDFAS-GRCRRGGGCPFLHPE 180 78*****.***********96 PP
2	zf-CCCH	21.7	3.7e-07	280	299	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ GtC+ G +Ck++H XP_023003110.1 280 ICNFFAA-GTCRNGKNCKYSH 299 89999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence
MSGSGRKRSS KWDLREESRP GWISPELASD DGSKRSGMET TNTVSKSKKD WGLLSKEPLS 60 ETRDSHKEDY TNKGYNKNME GTAEWDADKS YSTRMSPGLD GWRRHSSNPS DRNDWSRGRS 120 RSRSWSRSRS RSRTPPRSFK RDSGFHDRNR NRTRVSTQLC RDFASGRCRR GGGCPFLHPE 180 NQNLDDSWES RNKKGGRSVR STPHDFRDYS RSGRPAAPCT DFVKGRCHRG ESCKYPHDSG 240 FHELSRGSSN DISRDRENDR SKEAYLSRGE REPSSSSLVI CNFFAAGTCR NGKNCKYSHQ 300 SQPCASLERK SSADRWEQIE CSDGRERLWD GSKSNELASG SDFTQLREEK NKQIASQESR 360 YTWPSELKGG HGLNNESKIQ WDQAASIKAV QNSKNDIILS KPEDTGGCIG TSDSRGHRKW 420 PSDDMEMSPD WHFPVQPSNH VVKGDCNIIL DSGSQTSMAL ATLSHAIVQE ALAKKQDVTI 480 EPLTVDNTHF RQNHNLTKDV TMASVFNDKI TIDKTIASHA EGNPSGNIVL GQKMAYHPDH 540 PGGSVMNPNV ADGIFKVKPR EDDRSMPGIN PVTTITPNMV TSDQITQLTN LSVSLAQYFG 600 NVQPLPQLYA SLSTHNVSEI PSFPYSDAPV GALGTLMKTS PIIECSKQHD STVCNSLEVK 660 KLEATKIPSD SLLNFTGQKS MIDAKDEVQI PIFPLSSDPS NKIAISAKET LNESDAINHG 720 KRAAEGEANN KKNGDGDNEN RTEAGANEDS EENDTAENAN GNDGVHDKKK GKDTKGIRAF 780 KFALVEFVKE LLKPTWKEGH ISKDVYKTIV KKVVDKVTGT LQGGHIPQTQ EKIDQYLSFS 840 KSKLTKLVQA YVDRVQKTS

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence

MSGSGRKRSS KWDLREESRP GWISPELASD DGSKRSGMET TNTVSKSKKD WGLLSKEPLS  60
ETRDSHKEDY TNKGYNKNME GTAEWDADKS YSTRMSPGLD GWRRHSSNPS DRNDWSRGRS  120
RSRSWSRSRS RSRTPPRSFK RDSGFHDRNR NRTRVSTQLC RDFASGRCRR GGGCPFLHPE  180
NQNLDDSWES RNKKGGRSVR STPHDFRDYS RSGRPAAPCT DFVKGRCHRG ESCKYPHDSG  240
FHELSRGSSN DISRDRENDR SKEAYLSRGE REPSSSSLVI CNFFAAGTCR NGKNCKYSHQ  300
SQPCASLERK SSADRWEQIE CSDGRERLWD GSKSNELASG SDFTQLREEK NKQIASQESR  360
YTWPSELKGG HGLNNESKIQ WDQAASIKAV QNSKNDIILS KPEDTGGCIG TSDSRGHRKW  420
PSDDMEMSPD WHFPVQPSNH VVKGDCNIIL DSGSQTSMAL ATLSHAIVQE ALAKKQDVTI  480
EPLTVDNTHF RQNHNLTKDV TMASVFNDKI TIDKTIASHA EGNPSGNIVL GQKMAYHPDH  540
PGGSVMNPNV ADGIFKVKPR EDDRSMPGIN PVTTITPNMV TSDQITQLTN LSVSLAQYFG  600
NVQPLPQLYA SLSTHNVSEI PSFPYSDAPV GALGTLMKTS PIIECSKQHD STVCNSLEVK  660
KLEATKIPSD SLLNFTGQKS MIDAKDEVQI PIFPLSSDPS NKIAISAKET LNESDAINHG  720
KRAAEGEANN KKNGDGDNEN RTEAGANEDS EENDTAENAN GNDGVHDKKK GKDTKGIRAF  780
KFALVEFVKE LLKPTWKEGH ISKDVYKTIV KKVVDKVTGT LQGGHIPQTQ EKIDQYLSFS  840
KSKLTKLVQA YVDRVQKTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-11	C3H family protein