PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003109.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 862aa MW: 95898.1 Da PI: 8.8094

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	160	183	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 t lCr+fa G C++G+ C+F H++ XP_023003109.1 160 TQLCRDFAS-GRCRRGGGCPFLHPE 183 78*****.***********96 PP
2	zf-CCCH	21.7	3.7e-07	283	302	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ GtC+ G +Ck++H XP_023003109.1 283 ICNFFAA-GTCRNGKNCKYSH 302 89999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence
MSGSGRKRSS KWDLREESRP GWISPELASD DGSKRSGMET TNTVSKSKKD WGLLSKEPLS 60 ETRDSHKEDY TNKGYNKNME GTAEWDADKS YSTRMSPGLD GWRRHSSNPS DRNDWSRSVR 120 GRSRSRSWSR SRSRSRTPPR SFKRDSGFHD RNRNRTRVST QLCRDFASGR CRRGGGCPFL 180 HPENQNLDDS WESRNKKGGR SVRSTPHDFR DYSRSGRPAA PCTDFVKGRC HRGESCKYPH 240 DSGFHELSRG SSNDISRDRE NDRSKEAYLS RGEREPSSSS LVICNFFAAG TCRNGKNCKY 300 SHQSQPCASL ERKSSADRWE QIECSDGRER LWDGSKSNEL ASGSDFTQLR EEKNKQIASQ 360 ESRYTWPSEL KGGHGLNNES KIQWDQAASI KAVQNSKNDI ILSKPEDTGG CIGTSDSRGH 420 RKWPSDDMEM SPDWHFPVQP SNHVVKGDCN IILDSGSQTS MALATLSHAI VQEALAKKQD 480 VTIEPLTVDN THFRQNHNLT KDVTMASVFN DKITIDKTIA SHAEGNPSGN IVLGQKMAYH 540 PDHPGGSVMN PNVADGIFKV KPREDDRSMP GINPVTTITP NMVTSDQITQ LTNLSVSLAQ 600 YFGNVQPLPQ LYASLSTHNV SEIPSFPYSD APVGALGTLM KTSPIIECSK QHDSTVCNSL 660 EVKKLEATKI PSDSLLNFTG QKSMIDAKDE VQIPIFPLSS DPSNKIAISA KETLNESDAI 720 NHGKRAAEGE ANNKKNGDGD NENRTEAGAN EDSEENDTAE NANGNDGVHD KKKGKDTKGI 780 RAFKFALVEF VKELLKPTWK EGHISKDVYK TIVKKVVDKV TGTLQGGHIP QTQEKIDQYL 840 SFSKSKLTKL VQAYVDRVQK TS

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence

MSGSGRKRSS KWDLREESRP GWISPELASD DGSKRSGMET TNTVSKSKKD WGLLSKEPLS  60
ETRDSHKEDY TNKGYNKNME GTAEWDADKS YSTRMSPGLD GWRRHSSNPS DRNDWSRSVR  120
GRSRSRSWSR SRSRSRTPPR SFKRDSGFHD RNRNRTRVST QLCRDFASGR CRRGGGCPFL  180
HPENQNLDDS WESRNKKGGR SVRSTPHDFR DYSRSGRPAA PCTDFVKGRC HRGESCKYPH  240
DSGFHELSRG SSNDISRDRE NDRSKEAYLS RGEREPSSSS LVICNFFAAG TCRNGKNCKY  300
SHQSQPCASL ERKSSADRWE QIECSDGRER LWDGSKSNEL ASGSDFTQLR EEKNKQIASQ  360
ESRYTWPSEL KGGHGLNNES KIQWDQAASI KAVQNSKNDI ILSKPEDTGG CIGTSDSRGH  420
RKWPSDDMEM SPDWHFPVQP SNHVVKGDCN IILDSGSQTS MALATLSHAI VQEALAKKQD  480
VTIEPLTVDN THFRQNHNLT KDVTMASVFN DKITIDKTIA SHAEGNPSGN IVLGQKMAYH  540
PDHPGGSVMN PNVADGIFKV KPREDDRSMP GINPVTTITP NMVTSDQITQ LTNLSVSLAQ  600
YFGNVQPLPQ LYASLSTHNV SEIPSFPYSD APVGALGTLM KTSPIIECSK QHDSTVCNSL  660
EVKKLEATKI PSDSLLNFTG QKSMIDAKDE VQIPIFPLSS DPSNKIAISA KETLNESDAI  720
NHGKRAAEGE ANNKKNGDGD NENRTEAGAN EDSEENDTAE NANGNDGVHD KKKGKDTKGI  780
RAFKFALVEF VKELLKPTWK EGHISKDVYK TIVKKVVDKV TGTLQGGHIP QTQEKIDQYL  840
SFSKSKLTKL VQAYVDRVQK TS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-11	C3H family protein