PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023001635.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24802.8 Da    PI: 7.2947
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023001635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.1e-161150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+  r+ tf kR++g++KK  EL +LC++e++ iifs+
  XP_023001635.1 11 ITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSP 50
                    899************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MTRKKVKLTY ITNDAARKAT FKKRKKGLMK KLTELTTLCG IEACAIIFSP FNSQPDLWPS  60
VVGLERVLAK FKSLSEMEQC NKMVNQETFL RDRIAKATDQ LKKLQREKRE KEITRLMFES  120
LVAGATPPRD LNIIDLYDLV WLVDETMTDV CKRIELLTTT MTEPQVVSAV EPSWFMEMMS  180
HEAYDDQMGF KIWDDVIQLP NDDNHGAFWS NNGSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLTYITNDAARKATFKKRK
21732RKATFKKRKKGLMKKL
32226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-43M-type_MADS family protein